View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5462_low_5 (Length: 370)
Name: NF5462_low_5
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5462_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 5 - 352
Target Start/End: Original strand, 45829659 - 45830004
Alignment:
| Q |
5 |
ttggtatattttttccctcatctttaaatccagatttgtgtaagtttttcaccttcaatttcttccctttttatgtgtatgatgaaatgtctcattgaat |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |
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| T |
45829659 |
ttggtatattttttccctcatctttaaatccagatttgtgtaagtttttcaccttcaatatcttccccttttatgtgtttgatgaaatgtctcattgaat |
45829758 |
T |
|
| Q |
105 |
ttcaatctttagttctttagtttcatggaactaaatcgacgttgacaaaaatttctctattttttcagtctctattgaggagagcttcactgagagaaag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
45829759 |
ttcaatctttagttctttagtttcatggaactaaatggacattgacaaaaatttctctattttttcagtct--attgaggagagcttcactgacagaaag |
45829856 |
T |
|
| Q |
205 |
tgatgcatttgcatttctaagggccgataatgaagattgtattacgtattctgggttctgtgaagcacttcgacaggtttgttgcagcattaactgtgcc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45829857 |
tgatgcatttgcatttctaagggccgataatgaagattgtattacatattctgggttctgtgaagcacttcgacaggtttgttgcagcattaactgtgcc |
45829956 |
T |
|
| Q |
305 |
atcagcacgctaaaagaccatttattgctcatgcttatctgaaaatcc |
352 |
Q |
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|| ||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
45829957 |
attagcacgctaaaagaccatttagcgcacatgcttatctgaaaatcc |
45830004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 118 - 349
Target Start/End: Complemental strand, 42558333 - 42558102
Alignment:
| Q |
118 |
tctttagtttcatggaactaaatcgacgttgacaaaaatttctctattttttcagtctctattgaggagagcttcactgagagaaagtgatgcatttgca |
217 |
Q |
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| T |
42558333 |
tctttagtttcgtggaactaaatcgacgttgacaaaattttctctattttttcaggatctattgaggcgagcttcactgacagaaagtgatgcattcgca |
42558234 |
T |
|
| Q |
218 |
tttctaagggccgataatgaagattgtattacgtattctgggttctgtgaagcacttcgacaggtttgttgcagcattaactgtgccatcagcacgctaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
42558233 |
tttctaagggccgataatgaagattgtattacgtattctggtttctgtgaagcacttcgacaggtttgttgcagtattaactgtgcgattagcacgctaa |
42558134 |
T |
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| Q |
318 |
aagaccatttattgctcatgcttatctgaaaa |
349 |
Q |
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||||||||||| || |||||| ||||||||| |
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| T |
42558133 |
aagaccatttaacgcacatgctgatctgaaaa |
42558102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 22141407 - 22141304
Alignment:
| Q |
5 |
ttggtatattttttccctcatctttaaatccagatttgtgtaagtttttcaccttcaatttcttccctttttatgtgtatgatgaaatgtctcattgaat |
104 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
22141407 |
ttggtatattttttccatcatctttaaatccagatttgtttaagtttttcaccttcactttcatccccttttatgtgtttgatgaaatgtctcattgaat |
22141308 |
T |
|
| Q |
105 |
ttca |
108 |
Q |
| |
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|||| |
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|
| T |
22141307 |
ttca |
22141304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 29160064 - 29160154
Alignment:
| Q |
185 |
agagcttcactgagagaaagtgatgcatttgcatttctaagggccgataatgaagattgtattacgtattctgggttctgtgaagcacttc |
275 |
Q |
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|||||||| | || ||| |||||||||||||| ||||||| ||| || |||||||||||||||| |||||||| || ||| ||||||||| |
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| T |
29160064 |
agagcttcgcagacagagagtgatgcatttgcttttctaaaggctgacgatgaagattgtattacatattctggtttttgtaaagcacttc |
29160154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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