View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5462_low_8 (Length: 326)

Name: NF5462_low_8
Description: NF5462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5462_low_8
NF5462_low_8
[»] chr7 (1 HSPs)
chr7 (9-307)||(44476524-44476822)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 44476822 - 44476524
Alignment:
Q  9 gataattctaaggtcccaccacaaacaatctgcgagtccaccgtaaaccctcccttttgcaaaactctacttgctaaccaaaacggcaccgtaattgact 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44476822 gataattctaaggtcccaccacaaacaatctgcgagtccaccgtaaaccctcccttttgcaaaactctacttgctaaccaaaacggcaccgtaattgact 44476723  T
Q  109 atggtcgtttctctatccgaaaatccttatcccaatcccgcaaattcttaaacttagtactttcgtatcttcaagataaatcatctttgtcacaaccaac 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44476722 atggtcgtttctccatccgaaaatccttatcccaatcccgcaaattcttaaacttagtactttcgtatcttcaagataaatcatctttgtcacaaccaac 44476623  T
Q  209 aatttcagctcttaaagattgtcaatttctagcccaacaaaatttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44476622 aatttcagctcttaaagattgtcaatttctagcccaacaaaatttcgaattcttatcaaacactcatcaaactgctaataaaactagcaatgttcttcc 44476524  T

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