View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5463-Insertion-1 (Length: 935)
Name: NF5463-Insertion-1
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463-Insertion-1 |
 | |
|
| [»] scaffold0464 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 21 - 693
Target Start/End: Complemental strand, 31868040 - 31867373
Alignment:
| Q |
21 |
caattctagagacaaaatctgggggattcgaactgtacgtgggctacatgttacctcaaacacttgttatccctgaatttctctgttacattcatactca |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
31868040 |
caattctagagacaaaatttgggggattcgaactgtaagccg-ctacatgttacctcaaacatttgttatccctgaatttctctgttacattcataccca |
31867942 |
T |
|
| Q |
121 |
ttctatcagctactattttttcactcaaaattgattcnnnnnnntggtagcaaaaatccaccaggtccaaaacctttgccaattattggtaaccttcaca |
220 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31867941 |
ttctatcagctactattttt-cactcaaaattgattcaaaaaa-tggtagcaaaaatccaccaggtccaaaacctttgccaattattggtaaccttcaca |
31867844 |
T |
|
| Q |
221 |
tgctaggaaaacttccacatcgttcccttcaattgctttctcaaaagtattgacccataatgtccttcaaattaggacaactccaaaccattgtggtttc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31867843 |
tgctaggaaaacttccacatcgttcccttcaattgctttctcaaaaatattgacccataatgtccttcaaattaggacaagtccaaaccattgtggtttc |
31867744 |
T |
|
| Q |
321 |
atcacctcaaattgctgaattattcctcaagacccatgatagtattttctctagtagacccaaagcttttgctgcagattatatgacatatggaaaaaag |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31867743 |
atcacctcaaattgctgaattattcctcaagacccatgatagtattttctctagtacacccaaagcttttgctgcagattatatgacatatggtaaaaag |
31867644 |
T |
|
| Q |
421 |
ggaataatttttaccgagtatggtgactgttggcgcaatatgaggaaattgtgtagcgttcaattattgcattcttccaaagttgagatgtttgctcctt |
520 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31867643 |
ggaataatttttaccgagtatggcgactattggcgcaatatgaggaaattgtgtagcgttcaattattgcattcttcgaaagttgagatgtttgctcctt |
31867544 |
T |
|
| Q |
521 |
tgagaaagggaagaagttggattgttggttaagtcactaagaaattcagctacattacatgaggttgttaatgttagcaaggttgtagctgagcttatag |
620 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31867543 |
tgagaaa-ggaagaagttggattgttggttaagtcactaagaaattcagctacattacatgaggttgttaatgttagcaaggttgtagctgagcttatag |
31867445 |
T |
|
| Q |
621 |
agaatatcacttgtaaaatgatattgggacgaagcaaagatcattttcgacttaaaggggcttgttcacgagg |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
31867444 |
agaatatcacttgtaaaatgatattgggacgaagcaaagatga-tttcgacttaaaggggcttgttcacgagg |
31867373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 66 - 696
Target Start/End: Original strand, 31889101 - 31889733
Alignment:
| Q |
66 |
acatgttacctcaaacacttgttatccctgaatttctct--gttacattcatactcattctatcagctactattttttcactcaaaattgattcnnnnnn |
163 |
Q |
| |
|
||||||||||||||||| | | |||||||| |||||| |||| |||||| |||||||| ||||||||||||||| ||||||||| || || |
|
|
| T |
31889101 |
acatgttacctcaaacattcactctccctgaaattctctttgttatattcattctcattctgtcagctactattttta-actcaaaatggaatcaaaaaa |
31889199 |
T |
|
| Q |
164 |
ntggtagcaaaaatccaccaggtccaaaacctttgccaattattggtaaccttcacatgctaggaaaacttccacatcgttcccttcaattgctttctca |
263 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
31889200 |
atggtaggaaaaatccaccaggtccaaaacctttgccaattattggtaaccttcacatgctaggaaaacttccacatcgttcccttcaactcctttctca |
31889299 |
T |
|
| Q |
264 |
aaagtattgacccataatgtccttcaaattaggacaactccaaaccattgtggtttcatcacctcaaattgctgaattattcctcaagacccatgatagt |
363 |
Q |
| |
|
||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31889300 |
aaaatatggaccaataatgtccttcaaattaggacaagtccaaaccattgtggtttcatcacctcaaattgctgaattattcctcaagacccatgatagt |
31889399 |
T |
|
| Q |
364 |
attttctctagtagacccaaagcttttgctgcagattatatgacatatggaaaaaagggaataatttttaccgagtatggtgactgttggcgcaatatga |
463 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
31889400 |
attttctctagcaggcctaaagcttttgctgcagattatatgacatatggtaaaaagggcataattttcaccgagtatggcgactattggcgcaatatga |
31889499 |
T |
|
| Q |
464 |
ggaaattgtgtagcgttcaattattgcattcttccaaagttgagatgtttgctcctttgagaaagggaagaagttggattgttggttaagtcactaagaa |
563 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
31889500 |
ggaaattgtgtaccattcaattattgcattcttcaaaagttgagatgtttgctcctttgagaaa-ggaagaggttggattgttggttaagtcactaagaa |
31889598 |
T |
|
| Q |
564 |
attcagctacattacatgaggttgttaatgttagcaaggttgtagctgagcttatagagaatatcacttgtaaaatgatattgggacgaagcaaagatca |
663 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31889599 |
aatcagctacattacatgaggttgttaatgttagcaaggttgtggctgagcttattgagaatatcacttgtaaaatgatattgggacgaagcaaagatga |
31889698 |
T |
|
| Q |
664 |
t--tttcgacttaaaggggcttgttcacgaggcga |
696 |
Q |
| |
|
| |||||||||||||| |||||||| |||||| |
|
|
| T |
31889699 |
taggttcgacttaaagggtattgttcacaaggcga |
31889733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 31954434 - 31954353
Alignment:
| Q |
172 |
aaaaatccaccaggtccaaaacctttgccaattattggtaaccttcacatgctaggaaaacttccacatcgttcccttcaat |
253 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
31954434 |
aaaaatccacctggtccaaaacctttcccaattattggcaacctccacatcctaggaaaactaccacatcgtacccttcaat |
31954353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 730 - 836
Target Start/End: Original strand, 14964111 - 14964215
Alignment:
| Q |
730 |
atattaaattagaccatttgccgacggttagcaaccgtgtcaagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatg |
829 |
Q |
| |
|
|||||||||||||| |||||| | | |||||||||||| ||||||||||||| |||| | ||||||| ||||||||||| |||||||| ||||||| || |
|
|
| T |
14964111 |
atattaaattagac-atttgcgg-cagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcttcatttgcgacagttggcaagtgtcgcagtg |
14964208 |
T |
|
| Q |
830 |
ccttttg |
836 |
Q |
| |
|
||||||| |
|
|
| T |
14964209 |
ccttttg |
14964215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 799 - 873
Target Start/End: Complemental strand, 12353793 - 12353709
Alignment:
| Q |
799 |
tcatttgcgactgttggcaactgtcgcaatgccttttg-----------gcggctgttctatgaagggtcgcaaatggacacttgc |
873 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12353793 |
tcatttgcgactgttggcaactgtcgcagtgccttttgcggcagttggtgcggctgttctatgaagggtcgcaaat-gacacttgc |
12353709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 799 - 836
Target Start/End: Complemental strand, 33594787 - 33594750
Alignment:
| Q |
799 |
tcatttgcgactgttggcaactgtcgcaatgccttttg |
836 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33594787 |
tcatttgcgactgttggcaactgtcgcagtgccttttg |
33594750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 733 - 873
Target Start/End: Original strand, 4104779 - 4104927
Alignment:
| Q |
733 |
ttaaattagaccatttgccgacggttagcaaccgtgtcaagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatgcct |
832 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||| ||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4104779 |
ttaaattagac-atttgc-gacagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcctcatttgcgattgttggcaactgtcgcaatgcct |
4104876 |
T |
|
| Q |
833 |
tttg-----------gcggctgttctatgaagggtcgcaaatggacacttgc |
873 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4104877 |
tttgcggcagttggtgcggctgttctatgaagggtcgcaaat-gacacttgc |
4104927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 751 - 836
Target Start/End: Original strand, 48631673 - 48631758
Alignment:
| Q |
751 |
cgacggttagcaaccgtgtcaagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatgccttttg |
836 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
48631673 |
cgacggttagcaaccgttgcaagtcccttgaaatccatgtgaatctcctcatttgcgactgttcgcaactgtcgcagtgccttttg |
48631758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 733 - 873
Target Start/End: Complemental strand, 14979434 - 14979286
Alignment:
| Q |
733 |
ttaaattagaccatttgccgacggttagcaaccgtgtcaagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatgcct |
832 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||| ||||||||||||| |||| | |||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
14979434 |
ttaaattagac-atttgc-gacagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcctcatttgcgactgttgaaaactgtcgcagtgcct |
14979337 |
T |
|
| Q |
833 |
tttg-----------gcggctgttctatgaagggtcgcaaatggacacttgc |
873 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14979336 |
tttgcggcagttggtgcggctgttctatgaagggtcgcaaat-gacacttgc |
14979286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 728 - 836
Target Start/End: Original strand, 18803481 - 18803587
Alignment:
| Q |
728 |
gcatattaaattagaccatttgccgacggttagcaaccgtgtcaagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaa |
827 |
Q |
| |
|
|||||||||||||||| |||||| | | |||||||||||| ||||||||||||| |||| | ||||||| ||||||| ||| |||||||| ||||||| |
|
|
| T |
18803481 |
gcatattaaattagac-atttgcgg-cagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcttcatttgtgacagttggcaagtgtcgcag |
18803578 |
T |
|
| Q |
828 |
tgccttttg |
836 |
Q |
| |
|
||||||||| |
|
|
| T |
18803579 |
tgccttttg |
18803587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 756 - 836
Target Start/End: Original strand, 15423577 - 15423659
Alignment:
| Q |
756 |
gttagcaaccgtgtcaagtcccttgaag--tccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatgccttttg |
836 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| | ||||||| ||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
15423577 |
gttagcaaccgttgcaagtccattgaaaaatccatgtgaatctcttcatttgcgacggttggcaagtgtcgcagtgccttttg |
15423659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 733 - 836
Target Start/End: Complemental strand, 44717870 - 44717769
Alignment:
| Q |
733 |
ttaaattagaccatttgccgacggttagcaaccgtgtcaagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatgcct |
832 |
Q |
| |
|
||||||||||| |||||| ||| ||||||| |||| ||||||||||||| |||| | ||||||| |||||||||||||||||||||||||||| || || |
|
|
| T |
44717870 |
ttaaattagac-atttgc-gacagttagcatccgttgcaagtcccttgaaatccatgtgaatctcgtcatttgcgactgttggcaactgtcgcagtggct |
44717773 |
T |
|
| Q |
833 |
tttg |
836 |
Q |
| |
|
|||| |
|
|
| T |
44717772 |
tttg |
44717769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 751 - 836
Target Start/End: Original strand, 4332 - 4416
Alignment:
| Q |
751 |
cgacggttagcaaccgtgtcaagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatgccttttg |
836 |
Q |
| |
|
|||| ||||||||| || ||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
4332 |
cgacagttagcaactgttgcaagtcccttgaa-tccatgtgaatctcctcatttgcgactgttagcaactgtcgcagtgccttttg |
4416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 770 - 836
Target Start/End: Complemental strand, 21300586 - 21300520
Alignment:
| Q |
770 |
caagtcccttgaagtccacgcgaatctcctcatttgcgactgttggcaactgtcgcaatgccttttg |
836 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
21300586 |
caagtcccttgaataccatgtgaatctcctcatttgcggctgttagcaactgtcgcagtgccttttg |
21300520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University