View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5463-Insertion-3 (Length: 790)

Name: NF5463-Insertion-3
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5463-Insertion-3
NF5463-Insertion-3
[»] chr2 (53 HSPs)
chr2 (5-739)||(9364229-9364950)
chr2 (13-583)||(9315639-9316192)
chr2 (226-573)||(9284163-9284510)
chr2 (218-573)||(9328413-9328768)
chr2 (7-127)||(12012945-12013065)
chr2 (218-571)||(11987465-11987815)
chr2 (218-572)||(12006092-12006446)
chr2 (7-127)||(11987883-11988003)
chr2 (218-571)||(12012521-12012877)
chr2 (5-127)||(12019285-12019404)
chr2 (218-557)||(10352923-10353262)
chr2 (5-110)||(9291550-9291655)
chr2 (218-406)||(10335670-10335858)
chr2 (5-124)||(9284606-9284724)
chr2 (226-575)||(9320804-9321150)
chr2 (5-119)||(8573932-8574048)
chr2 (438-575)||(9065564-9065701)
chr2 (5-127)||(9320583-9320705)
chr2 (230-571)||(12018857-12019204)
chr2 (439-522)||(7611974-7612057)
chr2 (6-97)||(10352723-10352814)
chr2 (438-555)||(10335878-10335995)
chr2 (438-563)||(16269123-16269248)
chr2 (438-557)||(9291971-9292090)
chr2 (440-577)||(9274557-9274694)
chr2 (438-557)||(9061130-9061249)
chr2 (218-345)||(9291736-9291863)
chr2 (56-185)||(10371502-10371633)
chr2 (441-555)||(8573496-8573610)
chr2 (215-345)||(8573727-8573857)
chr2 (443-576)||(10347824-10347957)
chr2 (438-571)||(10371892-10372025)
chr2 (287-555)||(7115633-7115904)
chr2 (228-356)||(8579695-8579823)
chr2 (7-71)||(12006545-12006609)
chr2 (439-522)||(17566107-17566190)
chr2 (212-345)||(9061360-9061493)
chr2 (212-372)||(9065788-9065948)
chr2 (5-107)||(9274177-9274276)
chr2 (5-117)||(9061584-9061698)
chr2 (218-293)||(10347575-10347650)
chr2 (441-501)||(8579532-8579592)
chr2 (36-124)||(9295056-9295144)
chr2 (5-119)||(9066039-9066151)
chr2 (5-185)||(10347386-10347560)
chr2 (218-298)||(7115917-7115997)
chr2 (5-80)||(10335418-10335493)
chr2 (9-127)||(9328216-9328324)
chr2 (246-345)||(10371679-10371778)
chr2 (155-209)||(8576658-8576712)
chr2 (6-76)||(10341012-10341082)
chr2 (506-559)||(8576396-8576449)
chr2 (218-299)||(9274314-9274395)
[»] chr1 (8 HSPs)
chr1 (243-649)||(29453210-29453607)
chr1 (243-575)||(29467751-29468083)
chr1 (243-577)||(29423104-29423438)
chr1 (240-649)||(29443227-29443627)
chr1 (5-127)||(29422925-29423046)
chr1 (7-162)||(29453658-29453813)
chr1 (9-185)||(29443649-29443837)
chr1 (38-112)||(29468200-29468273)
[»] chr8 (1 HSPs)
chr8 (5-550)||(41966701-41967252)
[»] scaffold0667 (3 HSPs)
scaffold0667 (443-567)||(4510-4634)
scaffold0667 (5-151)||(4057-4204)
scaffold0667 (226-296)||(4275-4345)
[»] chr3 (4 HSPs)
chr3 (5-128)||(37462082-37462206)
chr3 (359-573)||(37462444-37462661)
chr3 (441-501)||(39427680-39427740)
chr3 (218-277)||(37462279-37462338)
[»] chr7 (6 HSPs)
chr7 (438-559)||(45243733-45243854)
chr7 (441-513)||(45237987-45238059)
chr7 (438-539)||(45230466-45230570)
chr7 (236-345)||(45230240-45230349)
chr7 (243-342)||(45237765-45237864)
chr7 (155-208)||(45243436-45243489)
[»] chr4 (4 HSPs)
chr4 (6-97)||(26574509-26574600)
chr4 (438-557)||(26574895-26575014)
chr4 (439-522)||(561257-561340)
chr4 (230-342)||(561009-561121)
[»] chr5 (1 HSPs)
chr5 (440-501)||(36224454-36224515)


Alignment Details
Target: chr2 (Bit Score: 640; Significance: 0; HSPs: 53)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 5 - 739
Target Start/End: Original strand, 9364229 - 9364950
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364229 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 9364328  T
Q  105 tatcatatgatgggttcattgaaccgatatagcttatacacagcaaagactcagataaacaacaagtaccttctcttgcttatactttcacatctcaatt 204  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364329 tatcatatgatgggttcattgaacggatatagcttatacacagcaaagactcagataaacaacaagtaccttctcttgcttatactttcacatctcaatt 9364428  T
Q  205 tgtgtaaattctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364429 tgtgtaaattctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaac 9364528  T
Q  305 actagtaacgttttcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctc 404  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364529 actagtaacgttttcactcttgagatcgtaccaaaacagcttcttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctc 9364628  T
Q  405 aacgatttcaaaggtgtcggaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaattt 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9364629 aacgatttcaaaggtgtcggaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaattt 9364728  T
Q  505 gagtagtttgataattcacaatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaactctcactctcactctcactattaacttcacctat 604  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||||    
T  9364729 gagtagtttgataattcacaatcatactaagacaccctcccaaaaccgcaacatcgatttcaaa------actctcactctcattattaacttcacctat 9364822  T
Q  605 ttcaggaagtggaacttcattgaaaatctctagtgttaagttaaaacgccaactattaaatcaggttgaaacggtttcgagtttcccttgtccacaaccc 704  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||| ||    
T  9364823 ttcaggaagtggaacttcattgaaaatctctagtgttaagtt-aaacg-caactattaaatcaggttgaaacgg-ttcgagttt-ccttgt-cacaa-cc 9364916  T
Q  705 caatgaaagagaatttgaattcaaattattcgaat 739  Q
    ||||| |||||||||||||||||||||||||||||    
T  9364917 caatg-aagagaatttgaattcaaattattcgaat 9364950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 13 - 583
Target Start/End: Original strand, 9315639 - 9316192
Alignment:
Q  13 ataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatat 112  Q
    ||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||| ||||||||||||  ||||||||||| ||| ||||||||||    
T  9315639 ataaacaaaggtagagaatttaaagtaattagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatat 9315738  T
Q  113 gatgggttcattgaaccgata-tagcttatacacagcaaagactcagataaacaacaagtaccttctcttgcttatactttcacatctcaatttgtgtaa 211  Q
    ||||||| |||||||| || | || |||||||| |||||| ||||| ||||   | |||||||||||||||    | ||| |          |||| |      
T  9315739 gatgggtccattgaactgacattaacttatacatagcaaaaactcaaataatatataagtaccttctcttg----ttcttgc----------ttgtat-g 9315823  T
Q  212 attctcct---tcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacacta 308  Q
    ||||||||   ||||||||| ||||||||| || |||||||||||||||||  ||||||||||||||||||||| || ||||| |||||||  ||||  |    
T  9315824 attctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttcaacataa 9315923  T
Q  309 gtaacgttttcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacg 408  Q
     |||| | ||||||| | |  ||  |||||||||||| ||||| |||||||||||||| ||||||  |||| ||||| ||||||||||||||| ||||      
T  9315924 ataacttgttcactcatcaagtcacaccaaaacagcttcttacaatctatttccaatagaaccttacttccgtcactagaataacctaaaggcttcaaaa 9316023  T
Q  409 atttcaaaggtgtcg-gaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgag 507  Q
    | ||||||| |   | |||| | || |   ||||||||||| | |||||||||||||       ||||||| ||||||||||||||||||||| ||| ||    
T  9316024 aattcaaagataaagtgaaacatgaat-taaccaaagtaaaaagtttacaccaacta------gatccatagtctttcatcacccaaacatcagttttag 9316116  T
Q  508 tagtttgataattcacaatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaactctcactctcact 583  Q
    ||||||||||||||| |||| ||| |||||||||||||||||| |||||| | |||| ||||||||||| ||||||    
T  9316117 tagtttgataattcaaaatcatacaaagacaccctcccaaaacagcaacagcaatttgaaaactctcacactcact 9316192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 226 - 573
Target Start/End: Complemental strand, 9284510 - 9284163
Alignment:
Q  226 aattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactctt 325  Q
    ||||||||||||| || |||||||| ||||||||  ||||||||||||||||||||| || |||||||||||||  ||||  | |||| |  ||||||||    
T  9284510 aattatcaacagggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactctt 9284411  T
Q  326 gagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggtgtcg-g 424  Q
     | ||| ||||||| ||||| ||||| ||||||||| |||| ||||||  | |||||||| |||||||||||||||||||| ||||||||| ||   | |    
T  9284410 caaatcataccaaaccagcttcttacaatctatttctaatagaaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtg 9284311  T
Q  425 aaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcaca 524  Q
    ||    || |   ||||||||||| | |||||||||||||||| |  | ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  9284310 aaccgtga-tttaaccaaagtaaaaattttacaccaactatctctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcaca 9284212  T
Q  525 atcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaactct 573  Q
    ||| |||||||||| ||||| ||||| ||||| || |  ||||||||||    
T  9284211 atcatactaagacaacctcctaaaacagcaacctcaaggtcaaaactct 9284163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 218 - 573
Target Start/End: Original strand, 9328413 - 9328768
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 317  Q
    ||||||| ||||||||||||| || ||||||||||||||||| |||||| ||| |||| | ||||  | || ||||||||||  ||||  | |||| | |    
T  9328413 cttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaattccttcaacataactaacttgt 9328512  T
Q  318 tcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaag 417  Q
     ||||| | | ||| ||| ||||||||| || |  ||| |    ||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  9328513 gcactcctaaaatcatacaaaaacagcttctcaaaatccaccctcaacaaaaccttttttccatcactcaaataacctaaaggcctcaaagatttcaaag 9328612  T
Q  418 gtgtc-ggaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgat 516  Q
    ||    ||||| | || |   |||| |||||| | |||||||||||||||| |  ||||||||| ||||||||||||||||||||||| |||||||| ||    
T  9328613 gtaaatggaaacacgattta-accatagtaaaaagtttacaccaactatctctatatccatattgtttcatcacccaaacatcaatttcagtagtttcat 9328711  T
Q  517 aattcacaatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaactct 573  Q
    |||||| | || | | ||||||||||||||||||  ||||||| |||||||||||||    
T  9328712 aattcaaagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaactct 9328768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 12013065 - 12012945
Alignment:
Q  7 atatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatata 106  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||| ||| ||||||||    
T  12013065 atatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttgacctttaacatggagtctaactacatata 12012966  T
Q  107 tcatatgatgggttcattgaa 127  Q
    ||||||||||||| |||||||    
T  12012965 tcatatgatgggtccattgaa 12012945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 218 - 571
Target Start/End: Complemental strand, 11987815 - 11987465
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 317  Q
    ||||||| ||||||||||||| || || |||||||||||||| ||||||||||||||||||||||  |  |||||||||||   ||||  | |||  | |    
T  11987815 cttcctagaattatcaacagggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgt 11987716  T
Q  318 tcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaag 417  Q
    |||||||| | ||| ||||||| ||||| |||  |||  |  ||||| |||||||| || ||||||||||||||||| ||||| ||||| ||||||||||    
T  11987715 tcactcttcaaatcataccaaaccagcttcttgtgattaagatccaacaaaacctttttaccatcactcgaataacccaaagggctcaaagatttcaaag 11987616  T
Q  418 gtgtcg-gaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgat 516  Q
    ||     |||| | || ||| | ||| || || | |||||||||||||||| |  |||||||||||||||||||||||| |||||| |   |||| ||||    
T  11987615 gtaaaacgaaacacgattcc-atcaatgtgaaaagtttacaccaactatctctacatccatattctttcatcacccaaatatcaatct---tagtatgat 11987520  T
Q  517 aattcacaatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaact 571  Q
     ||||||| ||  || |||||||||||||||||| |||||||| |||||||||||    
T  11987519 gattcacagtcaaacaaagacaccctcccaaaacagcaacatcaatttcaaaact 11987465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 218 - 572
Target Start/End: Complemental strand, 12006446 - 12006092
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 317  Q
    |||| ||||||| |||||||| || |||||  |||||||||| |||||||||||||| |||||||  | ||| ||||||||   ||    | |||| | |    
T  12006446 cttcgtacaattctcaacagggaaggaaggcagtacaagacttccaacacaaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttct 12006347  T
Q  318 tcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaag 417  Q
    |||||||| | ||| ||||||| ||||| |||| ||| ||  || || ||||  || ||||||||||| ||||||||||||||  |||| ||| ||| ||    
T  12006346 tcactcttcaaatcataccaaaccagcttcttatgatttacctcaaacaaaagtttttttccatcacttgaataacctaaagggatcaaagatatcacag 12006247  T
Q  418 gtgtcg-gaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgat 516  Q
    ||     |||| | || ||||| ||||||||| | ||||||||||||||||||  | |||||||||||||||||||| |||||||| | |||||||||||    
T  12006246 gtaaaacgaaacacga-tcccatcaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgat 12006148  T
Q  517 aattcacaatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaactc 572  Q
    |||||||||||  || |||||||||||||||| | |||||||  ||||||||||||    
T  12006147 aattcacaatcaaacaaagacaccctcccaaatcagcaacattaatttcaaaactc 12006092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 11988003 - 11987883
Alignment:
Q  7 atatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatata 106  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||| ||| ||||||| ||||||||    
T  11988003 atatacataaacaaaggtagagacttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatata 11987904  T
Q  107 tcatatgatgggttcattgaa 127  Q
    ||| ||||||||| |||||||    
T  11987903 tcacatgatgggtccattgaa 11987883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 218 - 571
Target Start/End: Complemental strand, 12012877 - 12012521
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 317  Q
    ||||||| ||||||||||||| || || |||||||||||||| ||||||||||||||||||||||  | |||||||||||||  ||||  | ||||   |    
T  12012877 cttcctagaattatcaacagggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaac---t 12012781  T
Q  318 tcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaa------ccttctttccatcactcgaataacctaaaggcctcaacgatt 411  Q
    | |||||| | ||| ||||||| ||||| |||| ||| ||  ||||| ||||      || | || |||||| |||||||||| ||||| |||||  ||     
T  12012780 tgactcttcaaatcataccaaaccagcttcttatgatttacctccaacaaaaacaaaaccattttaccatcattcgaataacccaaaggtctcaaaaata 12012681  T
Q  412 tcaaaggtgtcg-gaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtag 510  Q
    ||||||||     |||| | || ||| ||||||||||| | ||||||||||||||||||  | |||||||||||||||||| | |||||||| | |||||    
T  12012680 tcaaaggtaaaacgaaacacgattcc-accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtag 12012582  T
Q  511 tttgataattcacaatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaact 571  Q
    |||||| |||||||||| ||| |||||||||||||||| | ||||||   |||||||||||    
T  12012581 tttgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaact 12012521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 12019404 - 12019285
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |    | |||| ||||||||||| ||||||    
T  12019404 acatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattccaat---acattaacatagagtttaactacata 12019308  T
Q  105 tatcatatgatgggttcattgaa 127  Q
    ||||||||||||||| |||||||    
T  12019307 tatcatatgatgggtccattgaa 12019285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 218 - 557
Target Start/End: Original strand, 10352923 - 10353262
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 317  Q
    |||||||| |||||||||||| ||  |||||||||||||||| ||||||||||||||||  |||| || |||| ||||| || |||||  | |||| | |    
T  10352923 cttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatttcttgaacataactaacttgt 10353022  T
Q  318 tcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaag 417  Q
    | |||||  | ||| |||||||| || | || |  |||||    ||| |||||||| |||| ||||||||||||||||||| ||||||| |||| |||||    
T  10353023 ttactctccaaatcataccaaaatagattctcaacatctaccctcaacaaaaccttttttctatcactcgaataacctaaaagcctcaaagattgcaaag 10353122  T
Q  418 gtg--tcggaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttga 515  Q
    ||   ||| ||| |||| |   |||| |||||| | |||||||||||| ||| |  ||||||||||||||||||||||||||||||||| ||||  || |    
T  10353123 gtaaatcg-aaagaagattta-accacagtaaaaagtttacaccaactctctctacatccatattctttcatcacccaaacatcaattttagtatcttta 10353220  T
Q  516 taattcacaatcgtactaagacaccctcccaaaaccgcaaca 557  Q
    |||| ||||||| ||| |||||||||||| ||| | ||||||    
T  10353221 taatccacaatcatacaaagacaccctcctaaagcagcaaca 10353262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 9291550 - 9291655
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||  ||||||||||| |||||     
T  9291550 acatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataataagaattcaatttaacctttagcatagagtttaactacatg 9291649  T
Q  105 tatcat 110  Q
    ||||||    
T  9291650 tatcat 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 218 - 406
Target Start/End: Original strand, 10335670 - 10335858
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 317  Q
    |||||||| ||||||||||||||| |||||||  |||||||| ||||||||||||||||  |||| || |||||||||||||  ||||  | |||  | |    
T  10335670 cttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgt 10335769  T
Q  318 tcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaa 406  Q
    |||||||| | ||| |||||||||| || ||||| ||| |||||||||| ||||||  ||||||||||  |||||||||||||||||||    
T  10335770 tcactcttcaaatcataccaaaacaacttcttacaatcgatttccaatagaaccttacttccatcactacaataacctaaaggcctcaa 10335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 9284724 - 9284606
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  9284724 acatatacatagacaaag-tatagacatcaaagtaattggagactccttgtccgataataagaattcaatttgacctttaatataaagtttaactacata 9284626  T
Q  105 tatcatatgatgggttcatt 124  Q
     || ||||||||||| ||||    
T  9284625 aattatatgatgggtccatt 9284606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 226 - 575
Target Start/End: Original strand, 9320804 - 9321150
Alignment:
Q  226 aattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactctt 325  Q
    ||||||||||||| || |||||||| |||||||| |||||||||| |||| || |||  | || ||||||||||  ||||  | |||| | | |||||||    
T  9320804 aattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaattccttcaacataactaacttgtgcactctt 9320903  T
Q  326 gagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggt--gtcg 423  Q
     | ||| ||||||||||||| || |  |||||    ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||   ||     
T  9320904 caaatcataccaaaacagcttctcagcatctaccctcaacaaaaccttttttccatcactcgaataacctaaaggcctcaaagatttcaaaggtaaatc- 9321002  T
Q  424 gaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcac 523  Q
    | || | || |   |||| |||||| | |||||||||||||||| |  | |||||||||||||||||||||||||||| ||  |||||||  ||||        
T  9321003 gtaacacga-tttaaccatagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaacttttgtagtttcgtaat---a 9321098  T
Q  524 aatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaactctca 575  Q
    | || | | ||||||||||||||||||  ||||||| |||||||||||||||    
T  9321099 agtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaactctca 9321150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 8574048 - 8573932
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtccta--taataagaattccatttgacctttaatatagagtttaagtaca 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||  | |||||||||  ||||||||||||  |||||||||||  |||    
T  8574048 acatatacataaacaaaggtataaacttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacctttagcatagagtttaaccaca 8573949  T
Q  103 tatatcatatgatgggt 119  Q
    |||||||||||||||||    
T  8573948 tatatcatatgatgggt 8573932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 438 - 575
Target Start/End: Complemental strand, 9065701 - 9065564
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    ||||||||||| | |||||||||||||||| |  ||||||||||||||||||||||| ||||||| | |||||||| |||||||| |||| ||| |||||    
T  9065701 accaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaaatcatacaaagac 9065602  T
Q  538 accctcccaaaaccgcaacatcgatttcaaaactctca 575  Q
    ||||||||||||| ||||||   |||| ||||||||||    
T  9065601 accctcccaaaacagcaacagtcatttgaaaactctca 9065564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 9320583 - 9320705
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    |||||||| |||||||||||| ||||||||||||||||||||  ||||||||| ||||||| ||||| ||||||||| ||  ||||||||||| |  |||    
T  9320583 acatatacgtaaacaaaggtagagacttcaaagtaattagagtatccttgtccgataataaaaattcaatttgacctatagcatagagtttaacttaata 9320682  T
Q  105 tatcatatgatgggttcattgaa 127  Q
    ||||||||||||||| |||||||    
T  9320683 tatcatatgatgggtccattgaa 9320705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 230 - 571
Target Start/End: Complemental strand, 12019204 - 12018857
Alignment:
Q  230 atcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgaga 329  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||| |||||||  | |||||||||||||  ||||  | |||| |  | |||||| | |    
T  12019204 atcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaa 12019105  T
Q  330 tcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggt-gtcggaaaa 428  Q
    || ||||||| ||||   ||| ||| ||  ||||| |||||||| |||||||||||||||||||||||||| |||||  || | ||||||     ||||     
T  12019104 tcataccaaaccagcatattatgatttacatccaacaaaaccttttttccatcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaac 12019005  T
Q  429 aagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagttt------gataattca 522  Q
    | || | ||| ||||||||| | |||||||||||||||| |  |||||||||||||||||||||||||| | || | |||| |||      |||||||||    
T  12019004 acga-ttccatcaaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacacctatcttagtaatttgatttcgataattca 12018906  T
Q  523 caatcgtactaagacaccctcccaaaaccgcaacatcgatttcaaaact 571  Q
     ||||  || |||||||||||||||| | |||||| | |||| ||||||    
T  12018905 taatcaaacaaagacaccctcccaaatcagcaacagcaatttgaaaact 12018857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 439 - 522
Target Start/End: Original strand, 7611974 - 7612057
Alignment:
Q  439 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattca 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | |||||| ||||||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattca 7612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 10352723 - 10352814
Alignment:
Q  6 catatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaa 97  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||||    
T  10352723 catatacataaacaaaggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacctataatatagagtttaa 10352814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 438 - 555
Target Start/End: Original strand, 10335878 - 10335995
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    |||||||||||   |||||||||||||||| |  | ||||||||||||||||||||||||||||||| |||||||||||||||||||  |  || |||||    
T  10335878 accaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacaggcaaacaaagac 10335977  T
Q  538 accctcccaaaaccgcaa 555  Q
    ||||||||||||| ||||    
T  10335978 accctcccaaaacagcaa 10335995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 438 - 563
Target Start/End: Original strand, 16269123 - 16269248
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    ||||| ||||| | ||| |||||||||||| |  ||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |  ||| |||||    
T  16269123 accaaggtaaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataattcacagttatacaaagac 16269222  T
Q  538 accctcccaaaaccgcaacatcgatt 563  Q
    | ||||||||||| ||||||||||||    
T  16269223 atcctcccaaaacagcaacatcgatt 16269248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 438 - 557
Target Start/End: Original strand, 9291971 - 9292090
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    ||||||||||| | |||||||||||||||| |  | ||||||| ||||||||||||||||||||||| |||||||| |||||||||| || ||| |||||    
T  9291971 accaaagtaaaaagtttacaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagac 9292070  T
Q  538 accctcccaaaaccgcaaca 557  Q
    || |||| ||||| ||||||    
T  9292071 actctcctaaaacagcaaca 9292090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 440 - 577
Target Start/End: Original strand, 9274557 - 9274694
Alignment:
Q  440 caaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagacac 539  Q
    ||||||||| | |||||||||||||||| |  | ||||||||||||||||||||||| |||| || |||| || ||||||||| | || ||| |||||||    
T  9274557 caaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacac 9274656  T
Q  540 cctcccaaaaccgcaacatcgatttcaaaactctcact 577  Q
    ||| |||||||  ||||||  |||||||||||||||||    
T  9274657 ccttccaaaacaacaacattaatttcaaaactctcact 9274694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 438 - 557
Target Start/End: Complemental strand, 9061249 - 9061130
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    ||||||||||| | |||||||||||||||| |  ||||||| ||||||||||||||||||||||||| ||||| || ||||||||||  | | | |||||    
T  9061249 accaaagtaaaaagtttacaccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataattcacagacatgcaaagac 9061150  T
Q  538 accctcccaaaaccgcaaca 557  Q
    |||| |||||||| ||||||    
T  9061149 acccacccaaaacagcaaca 9061130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 9291736 - 9291863
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttt 317  Q
    ||||||||||||||||||||| || |||||||||| ||||||  ||||||||||||||||||||| || |||||||||||||  ||||  | |||  | |    
T  9291736 cttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgt 9291835  T
Q  318 tcactcttgagatcgtaccaaaacagct 345  Q
    |||||||| | ||| |||||||||||||    
T  9291836 tcactcttcaaatcataccaaaacagct 9291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 10371502 - 10371633
Alignment:
Q  56 cctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatgatgggttcattgaaccgata-tagcttatacacagcaaagac 154  Q
    ||||| |||||||||| ||||||||||||| | ||||||||| | ||||||| ||||||||| | |||||||| |||| || |||||||||| |||| ||    
T  10371502 cctatgataagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatccattgaactgatattaacttatacacaacaaaaac 10371601  T
Q  155 tcagat-aaacaacaagtaccttctcttgctt 185  Q
    |||| | |||||| ||||||||||||||||||    
T  10371602 tcagttaaaacaataagtaccttctcttgctt 10371633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 441 - 555
Target Start/End: Complemental strand, 8573610 - 8573496
Alignment:
Q  441 aaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagacacc 540  Q
    |||||||| | |||||||||||||||| |  | ||||||||||||||||||||||||||||||| ||| |||| ||||||||||  | ||| ||||||||    
T  8573610 aaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacagacatacaaagacacc 8573511  T
Q  541 ctcccaaaaccgcaa 555  Q
    | |||||||| ||||    
T  8573510 cacccaaaacagcaa 8573496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 8573857 - 8573727
Alignment:
Q  215 ctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacg 314  Q
    |||||||||||||||||||||||| ||  |||||||||||||||| |||||||||| ||||||| |||||  |||||||||||||  ||||  | | ||     
T  8573857 ctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaattccttcaacataactgact 8573758  T
Q  315 ttttcactcttgagatcgtaccaaaacagct 345  Q
    | ||||||||| | ||| |||||||||||||    
T  8573757 tgttcactcttcaaatcataccaaaacagct 8573727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 443 - 576
Target Start/End: Original strand, 10347824 - 10347957
Alignment:
Q  443 agtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagacaccct 542  Q
    |||||| | |||||||||||||||| |  |||||||||||||||| |||||||||||||||| ||||  || |||||  ||| |  ||| ||||||||||    
T  10347824 agtaaaaagtttacaccaactatctctacatccatattctttcatgacccaaacatcaattttagtatctttataatcgacagtgatacaaagacaccct 10347923  T
Q  543 cccaaaaccgcaacatcgatttcaaaactctcac 576  Q
    |||||||| |||||||  | ||||||||||||||    
T  10347924 cccaaaacagcaacatgaacttcaaaactctcac 10347957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 438 - 571
Target Start/End: Original strand, 10371892 - 10372025
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    ||||||||||| | |||||||||||||||| |  | |||||||||||||||||||||| |||||  | |||||||| ||||| |||| || ||| |||||    
T  10371892 accaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagttttataatccacagtcatacaaagac 10371991  T
Q  538 accctcccaaaaccgcaacatcgatttcaaaact 571  Q
    ||||||| ||||| ||||||   |||||||||||    
T  10371992 accctcctaaaacagcaacacgaatttcaaaact 10372025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 287 - 555
Target Start/End: Complemental strand, 7115904 - 7115633
Alignment:
Q  287 attaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaaccttctttccatcactc 386  Q
    |||||||||||||  ||||| | |||| | ||| ||||| | ||| ||||||| ||||| | ||| |||||||||||||| ||||||  ||||||||||     
T  7115904 attaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttcctacaatctatttccaatagaaccttgcttccatcacta 7115805  T
Q  387 gaataacctaaaggcctcaacgattt---caaaggtg--tcggaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattc 481  Q
    ||||||||||||||||| ||| || |   ||||| |   ||| ||| | || |   ||||| ||||| | ||||||||| || ||| |  |||||||||     
T  7115804 gaataacctaaaggcctgaaccatgtaatcaaagataaatcg-aaacacgaatta-accaatgtaaaaagtttacaccagctgtctctagatccatattg 7115707  T
Q  482 tttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagacaccctcccaaaaccgcaa 555  Q
    ||||||||||||||||||  ||| |||||||  ||||||||||||| ||| |||||||||||||||||| ||||    
T  7115706 tttcatcacccaaacatctgttttagtagttctataattcacaatcatacaaagacaccctcccaaaacagcaa 7115633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 228 - 356
Target Start/End: Complemental strand, 8579823 - 8579695
Alignment:
Q  228 ttatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttga 327  Q
    ||||||| ||| || |||||||||| |||  | |||||| ||||||||| |||||| | ||||||||||||| |||||| |||||| | |||||| ||||    
T  8579823 ttatcaataggcaaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttga 8579724  T
Q  328 gatcgtaccaaaacagctccttacgatct 356  Q
    |||| ||||||||||||| ||||| ||||    
T  8579723 gatcataccaaaacagcttcttacaatct 8579695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 12006609 - 12006545
Alignment:
Q  7 atatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattc 71  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||    
T  12006609 atatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctaaaataagaattc 12006545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 439 - 522
Target Start/End: Complemental strand, 17566190 - 17566107
Alignment:
Q  439 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattca 522  Q
    |||| |||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||  | |||||||||||||||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataattca 17566107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 345
Target Start/End: Complemental strand, 9061493 - 9061360
Alignment:
Q  212 attctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagta 311  Q
    |||||||||| ||||| |||||||||| ||  |||||| ||| ||||| |||||| ||| |||||||||||  | |||||||||||||  ||||  | ||    
T  9061493 attctccttcttacaagtatcaacagggaagaaaggtgatacgagacttccaacataaaacatagcttcatcaaaattaggaattccttcaacataacta 9061394  T
Q  312 acgttttcactcttgagatcgtaccaaaacagct 345  Q
    || | ||||||||||||||| |||||||||||||    
T  9061393 acttgttcactcttgagatcataccaaaacagct 9061360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 212 - 372
Target Start/End: Complemental strand, 9065948 - 9065788
Alignment:
Q  212 attctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagta 311  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||||  |||||||||||| ||  ||||||  |||||||| ||||  ||||  | ||    
T  9065948 attctccttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaata 9065849  T
Q  312 acgttttcactcttgagatcgtaccaaaacagctccttacgatctatttccaataaaacct 372  Q
    || | ||||||||| | ||| |||||||| |||| || | ||||||  ||||| |||||||    
T  9065848 acttgttcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaacct 9065788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 9274177 - 9274276
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    ||||||||||||||||||||| |   |||||||||||||| || ||||||||||||||||||||||| |  |||||||||  ||| ||||||| ||||||    
T  9274177 acatatacataaacaaaggtaga---ttcaaagtaattagtgaatccttgtcctataataagaattcaacatgacctttagcataaagtttaactacata 9274273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 9061698 - 9061584
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactc-----cttgtcctataataagaattccatttgacctttaatatagagtttaagt 99  Q
    ||||||||||||||||||||| |   ||||||||||||||||| ||     |||||||||||| |||||||| |||| |||||||  ||||||||||| |    
T  9061698 acatatacataaacaaaggtaga---ttcaaagtaattagagaatcaaatccttgtcctataacaagaattcaatttaacctttagcatagagtttaact 9061602  T
Q  100 acatatatcatatgatgg 117  Q
    |||||||| |||||||||    
T  9061601 acatatattatatgatgg 9061584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 10347575 - 10347650
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattagga 293  Q
    |||||||| |||||||||||| || |||||||| |||||||| |||||||||| ||||| ||||||||||||||||    
T  10347575 cttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattagga 10347650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 501
Target Start/End: Complemental strand, 8579592 - 8579532
Alignment:
Q  441 aaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaa 501  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaa 8579532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 9295144 - 9295056
Alignment:
Q  36 agtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatatgatgggttcatt 124  Q
    ||||||||||||  || ||||||||||||||||||| ||||||||||||  |||||||||||  ||||| || ||||||||||| ||||    
T  9295144 agtaattagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtccatt 9295056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 9066151 - 9066039
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    |||| |||||||||||||||| | ||||||||||||||||||| || || |||||| |||||| ||| |||||||||| |    | ||||||  ||||||    
T  9066151 acatgtacataaacaaaggtagaaacttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttga--gcaaagtttagctacata 9066054  T
Q  105 tatcatatgatgggt 119  Q
    |||||||||||||||    
T  9066053 tatcatatgatgggt 9066039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 10347386 - 10347560
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactcct-tgtcctataataagaattccatttgacctttaatatagagtttaagtacat 103  Q
    ||||| |||||||||| |||| ||||||||||||||||||| | | || | |||||| |||||||||| ||||||         |||||||||| | |||    
T  10347386 acataaacataaacaa-ggtaaagacttcaaagtaattagaaaatactctatcctatgataagaattcaatttga---------tagagtttaactgcat 10347475  T
Q  104 atatcatatgatgggttcattgaaccgatatagcttatacacagcaaagactcagataaac---aacaagtaccttctcttgctt 185  Q
    |||| |||||||  || |||||||| |||||| |||||||||| |||| |||||| |||||   || ||||||||||||||||||    
T  10347476 atatgatatgataagtccattgaactgatataacttatacacaacaaaaactcagttaaacaataagaagtaccttctcttgctt 10347560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 7115997 - 7115917
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcc 298  Q
    ||||||||||||||||||||| || |||||||||||||| ||  ||| |||||||| |||| |||||| |||| |||||||    
T  7115997 cttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatcaaagctccattcaaattacgaattcc 7115917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 10335418 - 10335493
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacc 80  Q
    |||||||||||||||||||||  |||| || |||||||||||| ||||  |||||| |||||||||| ||||||||    
T  10335418 acatatacataaacaaaggtaacgactccagagtaattagagaatcctcatcctatgataagaattcaatttgacc 10335493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 9328216 - 9328324
Alignment:
Q  9 atacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatc 108  Q
    |||| |||||||||||| |||||||||||||||||||||         ||||  ||||||||| ||||||||||||  ||||||||||| | ||||||||    
T  9328216 atacgtaaacaaaggtagagacttcaaagtaattagagaa--------ctat--taagaattcaatttgacctttagcatagagtttaacttcatatatc 9328305  T
Q  109 atatgatgggttcattgaa 127  Q
    |||||| |||| |||||||    
T  9328306 atatgacgggtccattgaa 9328324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 246 - 345
Target Start/End: Original strand, 10371679 - 10371778
Alignment:
Q  246 ggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagct 345  Q
    ||||||||||||||||||||||||| |||||| |||| || ||||| | |||||  ||||  | |||| | ||||||||| | ||| |||||||||||||    
T  10371679 ggtggtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagct 10371778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 8576712 - 8576658
Alignment:
Q  155 tcagataaacaacaagtaccttctcttgcttatactttcacatctcaatttgtgt 209  Q
    |||||||||||| |||||||||||||||||||||  ||  |||||||| ||||||    
T  8576712 tcagataaacaataagtaccttctcttgcttatagctttgcatctcaacttgtgt 8576658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 10341012 - 10341082
Alignment:
Q  6 catatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccattt 76  Q
    |||||||| ||||||| ||| | || |||| ||||||||||| ||||| |||||| |||||||||| ||||    
T  10341012 catatacacaaacaaaagtaaatacatcaaggtaattagagaatccttatcctatgataagaattcaattt 10341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 8576449 - 8576396
Alignment:
Q  506 agtagtttgataattcacaatcgtactaagacaccctcccaaaaccgcaacatc 559  Q
    |||||||| |||||||||| || ||| |||||||||||| ||||| ||||||||    
T  8576449 agtagtttcataattcacactcatacaaagacaccctccaaaaacagcaacatc 8576396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 9274314 - 9274395
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcct 299  Q
    ||||||| ||||||||||||| || || |||||||||| ||| ||||| ||||| |||| | |||| |  ||||||||||||    
T  9274314 cttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttccattgaagttaggaattcct 9274395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 9e-63; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 243 - 649
Target Start/End: Complemental strand, 29453607 - 29453210
Alignment:
Q  243 gaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaaca 342  Q
    |||||||| |||||||| ||||||||||||||||||| ||  | |||||||||||||  ||||| | |||| | ||||||||||||||| ||||||||||    
T  29453607 gaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaaca 29453508  T
Q  343 gctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggtgtcg-gaaaaaagagtcccacca 441  Q
    ||| || || ||||| |||||| | |||| |  ||||||| ||||||||| ||||||||| ||| | ||||||||||     |||| | || |||  |||    
T  29453507 gcttctcacaatctacttccaacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccg-cca 29453409  T
Q  442 aagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagacaccc 541  Q
    ||||||| | || |||||| |||||| |  ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| ||| |||||||||    
T  29453408 aagtaaaaagttcacaccagctatctctacatccatattctttcatcacccaaacatcaattttaacagtttgataattcacaatcatacaaagacaccc 29453309  T
Q  542 tcccaaaaccgcaacatcgatttcaaaactctcactctcactctcactattaacttcacctatttcaggaagtggaacttcattgaaaatctctagtgtt 641  Q
    | |||||||||||||| | ||||||||||||||||| |     |||||     ||||||||||||||||||  ||||| ||||||||||||||  |||||    
T  29453308 ttccaaaaccgcaacaccaatttcaaaactctcactat-----tcact----tcttcacctatttcaggaaaaggaacctcattgaaaatctcgtgtgtt 29453218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 243 - 575
Target Start/End: Complemental strand, 29468083 - 29467751
Alignment:
Q  243 gaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaaca 342  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||  ||||  | |||| | ||||||||||||||| ||||||||||    
T  29468083 gaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaaaca 29467984  T
Q  343 gctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggtgtcg-gaaaaaagagtcccacca 441  Q
     || || | | |||| ||| || | |||| |  ||||||| ||||||||||||||||||||||| |||| |||  ||   | |||| | || ||  ||||    
T  29467983 acttctcatggtctacttcaaacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacga-tctaacca 29467885  T
Q  442 aagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtact-aagacacc 540  Q
    ||||||| | ||||| |||||||||| |  |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||  ||| ||||||||    
T  29467884 aagtaaaaagtttacgccaactatctctacatccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatc-aactaaagacacc 29467786  T
Q  541 ctcccaaaaccgcaacatcgatttcaaaactctca 575  Q
    ||||||||||||||||||| |||| ||||||||||    
T  29467785 ctcccaaaaccgcaacatcaattttaaaactctca 29467751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 243 - 577
Target Start/End: Original strand, 29423104 - 29423438
Alignment:
Q  243 gaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaaca 342  Q
    ||||||| ||||||||| |||||||||||||| |||| ||  | ||||||||||||| |||||| | |||| | ||||||||||||||| ||||||||||    
T  29423104 gaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaaca 29423203  T
Q  343 gctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggtgtcg-gaaaaaagagtcccacca 441  Q
    ||| || | |||||| || ||| | |||| |   |||||| ||||||||| ||||| ||||||| | ||||||||||   | |||| | || ||   |||    
T  29423204 gcttctcaggatctacttgcaacagaaccatacctccatcgctcgaataagctaaaagcctcaaagctttcaaaggtaaggtgaaacacgattctg-cca 29423302  T
Q  442 aagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagacaccc 541  Q
    ||||||| | ||||||||| |||||| |  |||||||||||||||||| |||||||||||||| |  |||||||||||||||| || ||| ||| |||||    
T  29423303 aagtaaaaagtttacaccagctatctctacatccatattctttcatcagccaaacatcaattttaacagtttgataattcacagtcatacaaaggcaccc 29423402  T
Q  542 tcccaaaaccgcaacatcgatttcaaaactctcact 577  Q
    | ||| |||||||||| | |||||||||||||||||    
T  29423403 ttccagaaccgcaacaccaatttcaaaactctcact 29423438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 240 - 649
Target Start/End: Complemental strand, 29443627 - 29443227
Alignment:
Q  240 aaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaa 339  Q
    ||||||||| |||||||||| ||||||||||| || || | || ||   |||||||||||  ||||  | ||||   ||||||||||||||| |||||||    
T  29443627 aaagaaggttgtacaagacttccaacacaaatgatggcatgatccaccctaggaattccttcaacataactaacacattcactcttgagatcataccaaa 29443528  T
Q  340 acagctccttacgatctatttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggtgt-cggaaaaaagagtccca 438  Q
    |||||| || |||||||| || ||| | |||| |  ||| ||| |||||||||||||||  |||||| | | ||||||||   | |||| | || ||       
T  29443527 acagcttctcacgatctacttgcaacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcag- 29443429  T
Q  439 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagaca 538  Q
    |||||||||| | ||||||||| |||||| |  ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||    
T  29443428 ccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcacccaaacatcaattttagcagtttgataattcacaatcatacaaagaca 29443329  T
Q  539 ccctcccaaaaccgcaacatcgatttcaaaactctcactctcactctcactattaacttcacctatttcaggaagtggaacttcattgaaaatctctagt 638  Q
    |||| ||| ||||| || | | |||| ||||||||||||         | ||  | ||||||||||||||||||  ||||| |||||||||||||| |||    
T  29443328 cccttccagaaccgaaataccaatttgaaaactctcact---------attaacatcttcacctatttcaggaaaaggaacctcattgaaaatctcgagt 29443238  T
Q  639 gttaagttaaa 649  Q
    |||| ||||||    
T  29443237 gttaggttaaa 29443227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 29422925 - 29423046
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    ||||||||||||||||||||| |||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||| | | ||||||||| || |||    
T  29422925 acatatacataaacaaaggtagagacttcaaaataattagagaatcattgtcatataataagaattcaatttgacctttta-acagagtttaactagata 29423023  T
Q  105 tatcatatgatgggttcattgaa 127  Q
    ||||||||||| ||| |||||||    
T  29423024 tatcatatgatcggtccattgaa 29423046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 29453813 - 29453658
Alignment:
Q  7 atatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatata 106  Q
    ||||||||||||  ||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |||| || ||||| ||| ||||||| | ||||||    
T  29453813 atatacataaacttaggtagagacttcaaagtaattagagaatccttgttctataataagaattcaattt-acttttaacataaagtttaactgcatata 29453715  T
Q  107 tcatatgatgggttcattgaaccgata-tagcttatacacagcaaagactcagataa 162  Q
    ||||||||||| |  ||||||| || | || |||||||| |||||| ||||||||||    
T  29453714 tcatatgatggatctattgaactgaaattaacttatacagagcaaaaactcagataa 29453658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 29443837 - 29443649
Alignment:
Q  9 atacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataata-------agaattccatttgacc-tttaatatagagtttaagta 100  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||       ||||||| |||||||| ||||| || |||||||| ||    
T  29443837 atacataaacaaaggtagagacttcaaaataattagagaatccttgtcctatgataagaattcagaattcaatttgaccttttaacatggagtttaacta 29443738  T
Q  101 catatatcatatgatgggttcattgaaccgata-tagcttatacacagcaaagactcag---ataaacaacaagtaccttctcttgctt 185  Q
     |||||||||||||||||| |||||||  |||| || |||||||| || ||| ||||||   || || || ||||||||||||||||||    
T  29443737 gatatatcatatgatgggtccattgaattgatattaacttatacaaagaaaaaactcaggtaatcaataagaagtaccttctcttgctt 29443649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 29468273 - 29468200
Alignment:
Q  38 taattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacatatatcatat 112  Q
    |||||||||| || |||||||||||||||||||| ||||||||||| | | ||||||||| | ||||||||||||    
T  29468273 taattagagaatcattgtcctataataagaattcaatttgacctttta-acagagtttaactgcatatatcatat 29468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 5 - 550
Target Start/End: Complemental strand, 41967252 - 41966701
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    |||| |||||||||||||||| || |||| ||||||||||||| |  || ||||||||||||||||| |||| |||||||| |||||||||||||||||     
T  41967252 acatgtacataaacaaaggtaaagccttcgaagtaattagagaatagttatcctataataagaattcaatttaacctttaacatagagtttaagtacatg 41967153  T
Q  105 tatcatatgatgggttcattgaaccgatatagcttatacacagcaaagactcagata---aacaacaagtaccttctcttgcttatactttcacatctca 201  Q
    |||  |||||||||| ||||| ||  || || | |||||| ||||||  || |||||   ||||| |||||||||||||||||| || | | ||||||||    
T  41967152 tattgtatgatgggtccattgcactaatctaacatatacaaagcaaaagctaagataatgaacaagaagtaccttctcttgcttgtagtctgacatctca 41967053  T
Q  202 atttgtgtaaattctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctgg 301  Q
      ||   || |||||||||| |||||||| ||||||| || ||||||||||||||||| |||||||||| ||| |||||||  | |||||||||||||      
T  41967052 gcttacatagattctccttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttc 41966953  T
Q  302 aacactagtaacgttttcactcttgagatcgtaccaaaacagctccttacgatctat---ttccaataaaaccttctttccatcactcgaataacctaaa 398  Q
    ||||  |||||  | ||||||||| | ||| ||||||||||| | |  |  ||  ||   || ||| | ||||||| ||||||| || ||| ||||||||    
T  41966952 aacataagtaatttgttcactcttcaaatcataccaaaacagtttcaaatcattaattccttgcaacagaaccttccttccatcgctagaacaacctaaa 41966853  T
Q  399 ggcctcaacgatttcaaaggtgtcg-gaaaaaagagtcccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaaca 497  Q
      || ||| |||||||||| ||  | |||| |||| |   ||||||||||| | ||||||||| |||||| |  ||| ||||||||||||||||||||||    
T  41966852 acccccaaggatttcaaagatgaagtgaaacaaga-tttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaaca 41966754  T
Q  498 tcaatttgagtagtttgataattcacaatcgtactaagacaccctcccaaaac 550  Q
    ||||  |   |||||||||||| ||||| | ||| ||||||||||||||||||    
T  41966753 tcaacatcgctagtttgataatccacaaccatacaaagacaccctcccaaaac 41966701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 77; Significance: 3e-35; HSPs: 3)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 443 - 567
Target Start/End: Original strand, 4510 - 4634
Alignment:
Q  443 agtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagacaccct 542  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| || ||| |||||| |||    
T  4510 agtaaaaagtttacaccaactatcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagacatcct 4609  T
Q  543 cccaaaaccgcaacatcgatttcaa 567  Q
    |||||| | |||||||| |||||||    
T  4610 cccaaagcagcaacatcaatttcaa 4634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 4057 - 4204
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaagtacata 104  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||| ||||| ||||||||||||||||| ||||||  ||||  | ||||||||| || |||    
T  4057 acatatacataaacaaaggtagagaattcaaagtaattatagaatccttttcctataataagaattcaatttgagttttagcacagagtttaactaaata 4156  T
Q  105 tatcatatgatgggttcattgaaccgata-tagcttatacacagcaaa 151  Q
     |||||||||||||| |||||||| |||| || |||||||||||||||    
T  4157 aatcatatgatgggtccattgaacagatattaacttatacacagcaaa 4204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 4275 - 4345
Alignment:
Q  226 aattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaatt 296  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||| ||||| |||| | || |||||||    
T  4275 aattatcaacaggaaaggaaggtggtacaagacttccaacacaaatcttagctccattgaaatcaggaatt 4345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 37462082 - 37462206
Alignment:
Q  5 acatatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacc-tttaatatagagtttaagtacat 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||  |||||  |||| |||||    
T  37462082 acatatacataaacaaaggtagagacttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacat 37462181  T
Q  104 atatcatatgatgggttcattgaac 128  Q
    |||||||||||||||| || |||||    
T  37462182 atatcatatgatgggtccaatgaac 37462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 359 - 573
Target Start/End: Original strand, 37462444 - 37462661
Alignment:
Q  359 ttccaataaaaccttctttccatcactcgaataacctaaaggcctcaacgatttcaaaggtgtcg-gaaaaaagagtcccaccaaagtaaacaatttaca 457  Q
    |||||| ||||||||  |||||||||| ||||||| |||||||||||| |||||||||||||  | |||| | || |    ||| |||| | | ||||||    
T  37462444 ttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttat-ccacagtacaaagtttaca 37462542  T
Q  458 ccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtag---tttgataattcacaatcgtactaagacaccctcccaaaaccgca 554  Q
    |||||||||| |  |||||||||||||||||||||||||||||| || |||||   ||| |||||||||| || ||| |||||| ||||||||||| |||    
T  37462543 ccaactatctctagatccatattctttcatcacccaaacatcaaatttagtagtttttttataattcacagtcatacaaagacagcctcccaaaacagca 37462642  T
Q  555 acatcgatttcaaaactct 573  Q
    ||||| | | |||||||||    
T  37462643 acatcaagtccaaaactct 37462661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 501
Target Start/End: Original strand, 39427680 - 39427740
Alignment:
Q  441 aaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaa 501  Q
    ||||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaa 39427740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 37462279 - 37462338
Alignment:
Q  218 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagc 277  Q
    ||||||||||||||||||||| |||| ||||| |||||||||  ||||||||||||||||    
T  37462279 cttcctacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatcatagc 37462338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 438 - 559
Target Start/End: Original strand, 45243733 - 45243854
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    ||||||||||| | |||||||||| ||||| |  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||    
T  45243733 accaaagtaaaaagtttacaccaaatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagac 45243832  T
Q  538 accctcccaaaaccgcaacatc 559  Q
    || |||||||||||||| ||||    
T  45243833 actctcccaaaaccgcatcatc 45243854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 441 - 513
Target Start/End: Original strand, 45237987 - 45238059
Alignment:
Q  441 aaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagttt 513  Q
    |||||||| | |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  45237987 aaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaatttgagtagttt 45238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 438 - 539
Target Start/End: Original strand, 45230466 - 45230570
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaa---catcaatttgagtagtttgataattcacaatcgtactaa 534  Q
    ||||||||||| | |||||||||||||||| |  | ||||||||||||||||||||||   ||||||||| | |||||||||||||||||||| ||| ||    
T  45230466 accaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcatcaattttattagtttgataattcacaatcatacaaa 45230565  T
Q  535 gacac 539  Q
    |||||    
T  45230566 gacac 45230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 45230240 - 45230349
Alignment:
Q  236 aggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtac 335  Q
    |||||| || |||| |||||| ||  || ||||||||||  ||||||| | | ||||||||||| |||||  |||||| | ||||||||||| ||| |||    
T  45230240 aggtaaggatggtgatacaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacatgagtaacttgttcactcttgaaatcatac 45230339  T
Q  336 caaaacagct 345  Q
    ||||||||||    
T  45230340 caaaacagct 45230349  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 342
Target Start/End: Original strand, 45237765 - 45237864
Alignment:
Q  243 gaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaaca 342  Q
    |||||||||||||| ||  || ||||||||||  ||||||||| | ||||||||||| |||||  | |||| | |||| ||||||| || ||||||||||    
T  45237765 gaaggtggtacaaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaaaaca 45237864  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 45243436 - 45243489
Alignment:
Q  155 tcagataaacaacaagtaccttctcttgcttatactttcacatctcaatttgtg 208  Q
    ||||||||||||||||||||||||||||  | | ||||| |||||||| |||||    
T  45243436 tcagataaacaacaagtaccttctcttgtatgtgctttcgcatctcaacttgtg 45243489  T

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Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 26574509 - 26574600
Alignment:
Q  6 catatacataaacaaaggtatagacttcaaagtaattagagactccttgtcctataataagaattccatttgacctttaatatagagtttaa 97  Q
    ||||||||||||||| |||| |||| |||||||||||||||| ||||| |||||| |||||||||| ||||||||| |||||||||||||||    
T  26574509 catatacataaacaacggtaaagacgtcaaagtaattagagaatccttatcctatgataagaattcaatttgacctataatatagagtttaa 26574600  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 557
Target Start/End: Original strand, 26574895 - 26575014
Alignment:
Q  438 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcgtactaagac 537  Q
    |||| |||||| | |||||||||||||||| |  ||||||||||||||||||||||||||||||||| ||||  || ||||| |||| || ||| |||||    
T  26574895 accacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccacagtcatacaaagac 26574994  T
Q  538 accctcccaaaaccgcaaca 557  Q
    ||||||| ||| | ||||||    
T  26574995 accctcctaaatcagcaaca 26575014  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 439 - 522
Target Start/End: Original strand, 561257 - 561340
Alignment:
Q  439 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattca 522  Q
    ||||||||||||||  ||||||||||||| | ||||||||||||||||| |||||||||||||  | |||||||| || |||||    
T  561257 ccaaagtaaacaatacacaccaactatctctaaatccatattctttcattacccaaacatcaaccttagtagttttattattca 561340  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 230 - 342
Target Start/End: Original strand, 561009 - 561121
Alignment:
Q  230 atcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgaga 329  Q
    ||||| ||| || |||||||||| ||| || |||||| |||||||| ||| ||| ||||||||||||||||||||||  ||| |  ||| ||| ||||||    
T  561009 atcaataggcaaggaaggtggtagaaggcttccaacataaatcataactttattgatattaggaattcctggaacacaggtagctcttttacttttgaga 561108  T
Q  330 tcgtaccaaaaca 342  Q
    || ||||||||||    
T  561109 tcataccaaaaca 561121  T

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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 501
Target Start/End: Original strand, 36224454 - 36224515
Alignment:
Q  440 caaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaa 501  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 36224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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