View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463-Insertion-4 (Length: 639)
Name: NF5463-Insertion-4
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 320 - 639
Target Start/End: Complemental strand, 44549065 - 44548745
Alignment:
| Q |
320 |
gcacacaacatatagatcaaaaagagggacctaccacagaactatcatcctttcttattgttgtggtagttcatccaaa-cacgatggatccctccatgg |
418 |
Q |
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| T |
44549065 |
gcacacaacatatagatcaaaaagagggacctaccacagaactatcatcctttcttattgttgtggtagttcatcaaaaacacgatggatccctccatgg |
44548966 |
T |
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| Q |
419 |
catgaaccctccttctagtggcgaatgctgatcgataacataacacaaaacatatggatcaaaaagagggcaatacaggagaaccactaaccaaattacc |
518 |
Q |
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| T |
44548965 |
catgaaccctccttctagcggcgaatgctgatcgataacataacacaaaacatatggatcaaaaagagggcaatacaggagaaccactaaccaaattacc |
44548866 |
T |
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| Q |
519 |
aagtctaattctaaactaataccatgatgcaagtttttgaagatgatatcatacaatataaattacaagaatattcaaaacttcagatgaagataacact |
618 |
Q |
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| T |
44548865 |
aagtctaattctaaactaataccatgatgcaagtttttgaagatgatatcatacaatataaattacaagaatattcaaaacttcagatgaagataacact |
44548766 |
T |
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| Q |
619 |
tgtttgcgccaataaattagc |
639 |
Q |
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| T |
44548765 |
tgtttgcgccaataaattagc |
44548745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 44549455 - 44549151
Alignment:
| Q |
8 |
caatcgagggtccaagtcgcaccgcattcataattttctatgattagagaggaccaagtgcacacattcggtcatcaaaaggtgtcttgttgaatgtgac |
107 |
Q |
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| T |
44549455 |
caattgagggtccaagtcgcaccgcattcataattttctatgattagagaggaccaagtgcacactttcggtcatcaaaaggtgtcttgttgaatgtgac |
44549356 |
T |
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| Q |
108 |
ttaaaatctcatcatatttcaagagaagggnnnnnnnnncaatagaaattcacatcacaagtttagtcacaagttnnnnnnnnnnnntaaactagagtaa |
207 |
Q |
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| T |
44549355 |
ttaaaatctcatcatatttcaagagaaggg-aaaaaaaacaatagaaattcacatcacaagtttagtcacaagttaaaaaacaaaaataaactagagtaa |
44549257 |
T |
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| Q |
208 |
attacattggagacaattacggtgcatccatttctaactagactggtgtaatacaaccttgcatcaccatagaaaatcaaacccaaaaagtaaacgatca |
307 |
Q |
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| T |
44549256 |
attacattggagacaattacggtgcatccatttctaactagactggtgtaatacaaccttgcatcaccatagaaaatcaaacccaaaaagtaaactatca |
44549157 |
T |
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| Q |
308 |
tccttt |
313 |
Q |
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| T |
44549156 |
tccttt |
44549151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 26223029 - 26222986
Alignment:
| Q |
93 |
cttgttgaatgtgacttaaaatctcatcatatttcaagagaagg |
136 |
Q |
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| T |
26223029 |
cttgttgaatgtgacttaaaatctcaccatgtatcaagagaagg |
26222986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 36512565 - 36512603
Alignment:
| Q |
94 |
ttgttgaatgtgacttaaaatctcatcatatttcaagag |
132 |
Q |
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| T |
36512565 |
ttgttgaatgtgacttaaaatctcaccatatatcaagag |
36512603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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