View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463-Insertion-5 (Length: 593)
Name: NF5463-Insertion-5
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 10 - 593
Target Start/End: Complemental strand, 3598841 - 3598262
Alignment:
| Q |
10 |
ccctatctatattgtgtgttgatccagattgctgaagnnnnnnnn-ggcttgctgcagctttagaaacacatattgcggaaggccttaataattattgac |
108 |
Q |
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| T |
3598841 |
ccctctctatattgtgtgttgatcgagattgctgaagaaaaaaaaaggcttgctgcagctttagaaacacaaattgcagatggccttaataattattgtc |
3598742 |
T |
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| Q |
109 |
ctaaattattaatccttttctagagattttaggatgctctaaggaggattggatacttggttagttactcttctcttttgaatagtttattttcatgagt |
208 |
Q |
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| T |
3598741 |
ctaaattattaatccttttctagagattttaggatgctctaaggaggattggatacttggtta----ctcttctcttttgaatagtttattttcatgagt |
3598646 |
T |
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| Q |
209 |
tgttagttcatttctcacatatacttggaaaaaattcatatttttagatgttactggttatgttgagaaagacattgtcacggaaactgnnnnnnnnnnn |
308 |
Q |
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| T |
3598645 |
tgttagttcatttctcacatatacttggaaaaaattcatatttttagatgttactggttatgttgagaaagacactgtcacggaaactgaaaaaaatgaa |
3598546 |
T |
|
| Q |
309 |
nnnnntcagcaaggctatggatgcgacgaaagaagatttagagtaagtcttaatctattaacattacttaatgcagaataattgctgataattacgtgct |
408 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
3598545 |
aaaaatcagcaaggctatggatgcgacgctagaagatttagagtaagtcttaatctattaacattactcaatgcagaataattgctgataattacatgct |
3598446 |
T |
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| Q |
409 |
ttttatttgattaatttacacttcgtaggggggaatagaattcattgcacattatcggatgactatgccgtgaaaatgcaaaagtttttggataatcatg |
508 |
Q |
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| T |
3598445 |
ttttatttgattaatttacactttgtaggggggaatagaattcattgcacattatcggatgactatgccgtgaaaatgtaaaagtttttggataatcatg |
3598346 |
T |
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| Q |
509 |
attatcacttcctgtgattgttttgtaaaacttcaggtaaagttcctaaatctttattccctaaaacttttatgtcaactatagt |
593 |
Q |
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| T |
3598345 |
attatcacttcctgtgattgttttgtaaaacttcaggtaaagttcctaaatctttagt-cttaaaacttttatgtcaactatagt |
3598262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 124 - 593
Target Start/End: Original strand, 4356289 - 4356763
Alignment:
| Q |
124 |
ttttctagagattttaggatgctctaaggaggattggatacttggttagttactcttctcttttgaatagtttattttcatgagttgttagttcatttct |
223 |
Q |
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| T |
4356289 |
ttttctagagattttagcatgctctaagaaggatcggatacttggttagttactcttctcttttgaattgtttattttcaggagttgttagttcatttct |
4356388 |
T |
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| Q |
224 |
cacatatacttggaaaa--aattcatatttttagatgttactggttatgttgagaaagacattgtcacggaaactgnnnnnnnnnnnnnnnntcagcaag |
321 |
Q |
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| T |
4356389 |
catatatacttggaaaatgaaatcatattttaagatgttattggtcatgttgagaaagacactgtcaaggaaactgaaaaaaaatggaaaaatcagcaag |
4356488 |
T |
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| Q |
322 |
gctatggatgcgacgaaagaagatttagagtaagtcttaatctattaacattacttaatgcagaataattgctgataattacgtgct----ttttatttg |
417 |
Q |
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| T |
4356489 |
gctacggttgtgacgctagaagatttagagcaagtcttaatctattaacattactcaatgcagaacaattgttgataattatgtgctaacttttaatttg |
4356588 |
T |
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| Q |
418 |
attaatttacacttcgtaggggggaatagaattcattgcacattatcggatgactatgccgtgaaaatgcaaaagtttttggataatcatgatt-atcac |
516 |
Q |
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| T |
4356589 |
attaatttgcacttcgtagggg-gaatagaattcattgcacattatcggatgactatgccgtgagaatgcaacaattttaggataatcatgattcatcgc |
4356687 |
T |
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| Q |
517 |
ttcctgtgattgttttgtaaaacttcaggtaaagttcctaaatctttattccctaaaacttttatgtcaactatagt |
593 |
Q |
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||||||||| |||| || ||||||||||||||||||||| |||||||| | | ||| |||||||||||||||||| |
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| T |
4356688 |
ttcctgtgactgttctgcaaaacttcaggtaaagttccttaatctttagt-atttaaatttttatgtcaactatagt |
4356763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 122 - 288
Target Start/End: Complemental strand, 45221567 - 45221399
Alignment:
| Q |
122 |
ccttttctagagattttaggatgctctaaggaggattggatacttggttagttactcttctcttttgaatagtttattttcatgagttgttagttcattt |
221 |
Q |
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||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
45221567 |
ccttttccagagattttagcatgctctaagaaggatcagatacttggttagttactcttctcttttgaattgtttattttcatgagtttttagttcattt |
45221468 |
T |
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| Q |
222 |
ctcacatatacttggaaaa--aattcatatttttagatgttactggttatgttgagaaagacattgtca |
288 |
Q |
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|||| |||||||||||||| || |||||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
45221467 |
ctcatatatacttggaaaatgaaatcatatttttagatgttattggtcatgttgagaaagacactgtca |
45221399 |
T |
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