View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5463-Insertion-6 (Length: 500)

Name: NF5463-Insertion-6
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5463-Insertion-6
NF5463-Insertion-6
[»] chr4 (1 HSPs)
chr4 (11-500)||(40820492-40820981)
[»] chr7 (10 HSPs)
chr7 (11-500)||(20292864-20293349)
chr7 (47-500)||(20169431-20169881)
chr7 (47-199)||(20302366-20302516)
chr7 (17-144)||(20090410-20090534)
chr7 (11-229)||(20300263-20300478)
chr7 (281-486)||(20064125-20064326)
chr7 (281-486)||(20272071-20272272)
chr7 (281-487)||(20277814-20278016)
chr7 (151-227)||(20262760-20262836)
chr7 (361-486)||(20302080-20302205)


Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Original strand, 40820492 - 40820981
Alignment:
Q  11 catgagaatacgcaaccgcaggagccattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttccaac 110  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||    
T  40820492 catgagaatacgcaac-gcaggagcaattgtgcagacataagcttctgcatatgtctggtgtaaca-gctacaccttctgcaaattctgaaacttc-aac 40820588  T
Q  111 cccatgcaatttccaaaacccattttcctttgtactcggggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccggcccgtccaa 210  Q
    | ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||    
T  40820589 cgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattgctgatcctttcacactccaaaggtgtcctcctaacacaccgacccgtccaa 40820688  T
Q  211 ttatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagctac-tattggcgagctcattaaactacagctggcaaatgctgcacata 307  Q
    |||||||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  40820689 ttatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgcaaatgctgcacata 40820788  T
Q  308 taccataaacatcacactatgattctcggcttgtc-atgtcatgtcactttcatttctttcttctcaccatcccatcgcgtttcatataattttccttgt 406  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  40820789 taccataaacatcacactatgattctcggcttgtccatgtcatgtcactttcatttctttcttctcatcatcccatcgcgtttcatctaattttccttgt 40820888  T
Q  407 gatcttagatgatagatcaaaatctcctcatcattttgtaaagtataatatatatcaatattcccttgtccatcatctcctactccaaaaccaa 500  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  40820889 gatgttaggtgatagatcaaaatctcctcatcattttgtaaagtataatatatat-aatattcccttgtccatcatctcctactcgaaaaccaa 40820981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 20293349 - 20292864
Alignment:
Q  11 catgagaatacgcaaccgcaggagccattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttccaac 110  Q
    |||||||||||||||  |||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||  |||    
T  20293349 catgagaatacgcaat-gcaggagcaattatgcaaacataagcttctgcatatttctggtgtaaca-gctacaccttctgcaaaatctggaacttt-aac 20293253  T
Q  111 cccatgcaatttccaaaacccattttcctttgtactcggggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccggcccgtccaa 210  Q
    |   | ||||||| ||||||||| |||||||||||| | |||||||||| ||| |||| |||||||||||||||||||| |||||||||  || ||||||    
T  20293252 catcttcaatttcaaaaacccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaa 20293153  T
Q  211 ttatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagctac-tattggcgagctcattaaactacagctggcaaatgctgcacata 307  Q
    |||||| ||||||||||||||  ||||||||||||||||||||  |||||||||| |||||| ||||||| | |||||||||| ||||| ||  ||||||    
T  20293152 ttatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaactacagcttgcaaaggccccacata 20293053  T
Q  308 taccataaacatcacactatgattctcggcttgtcatgtcatgtcactttcatttctttcttctcaccatcccatcgcgtttcatataattttccttgtg 407  Q
    |||||||||||||||||| |||||||||| |||||    ||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  20293052 taccataaacatcacactctgattctcgggttgtc----catgtcactttcatttctttcttctcatcatcccaccgcgtttcatctaattttccttgtg 20292957  T
Q  408 atcttagatgatagatcaaaatctcctcatcattttgtaaagtataatatatatcaatattcccttgtccatcatctcctactccaaaaccaa 500  Q
    |  | || ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||    
T  20292956 aagtcagctgatagatcaaaaactcatcatcattttgtaaagtataatatatgtcaatattccctgctccatcatctcctactcgaaaaccaa 20292864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 47 - 500
Target Start/End: Original strand, 20169431 - 20169881
Alignment:
Q  47 cataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttccaaccccatgcaatttccaaaacccattttcctttgtact 146  Q
    |||| ||||||||||||||||| |||||||  | | |||||| |||||||||| |||||  || |   || | |||| ||||||||| ||||||||||||    
T  20169431 cataggcttctgcatatgtctgatgtaacagtcaa-accttcagcaaaatctggaacttt-aatcatttgtagtttcaaaaacccatcttcctttgtact 20169528  T
Q  147 cggggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccggcccgtccaattatgtatactccattcttc--tgtttctgggtaca 244  Q
     | |||||||||| ||| |||| |||||| ||||||||||||   ||||||||  || ||||| ||||||||| |||||| |||  ||||||||||| ||    
T  20169529 tgtggttttattgttgaccctttcacactgcaaaggtgtccttcgaacacacccaccggtccagttatgtatattccattgttctatgtttctgggttca 20169628  T
Q  245 aatcctcgaaaacagctac-tattggcgagctcattaaactacagctggcaaatgctgcacatataccataaacatcacactatgattctcggcttgtca 343  Q
    || ||||  |||||||||| | |||| ||||||| | || |||| || ||||||||  ||||||   | ||||||||||||| |||||| || ||||||     
T  20169629 aaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaatgccccacataagtcgtaaacatcacactttgattcccgacttgtc- 20169727  T
Q  344 tgtcatgtcactttcatttctttcttctcaccatcccatcgcgtttcatataattttccttgtgatcttagatgatagatcaaaatctcctcatcatttt 443  Q
       |||   |||| || ||||||||||||| ||||||| | |||||| | ||||| ||||| |||  |||| | |||||| ||||  || ||||||||||    
T  20169728 ---catagaacttgcacttctttcttctcatcatcccaccccgtttcttctaattctccttttgaatttaggttatagataaaaaattcatcatcatttt 20169824  T
Q  444 gtaaagtataatatatatcaatattcccttgtccatcatctcctactccaaaaccaa 500  Q
    |||  | ||||||||| | ||||||||||| ||||||||||||| ||| ||||||||    
T  20169825 gtactgcataatatatgtaaatattcccttctccatcatctcctcctcgaaaaccaa 20169881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 199
Target Start/End: Complemental strand, 20302516 - 20302366
Alignment:
Q  47 cataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttccaaccccatgcaatttccaaaacccattttcctttgtact 146  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||  ||||   ||||||||| ||||||||| ||| ||||||||    
T  20302516 cataagcttctgcatatatctggtgtaac-agctacaccttctgcaaaatcgggaactt-taaccatctgcaatttcaaaaacccatcttcttttgtact 20302419  T
Q  147 cggggttttattgctgatccttccacactccaaaggtgtcctcgtaacacacc 199  Q
     | |||||||||| ||| |||| |||||| ||||| | | ||| |||||||||    
T  20302418 tgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacacc 20302366  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 20090410 - 20090534
Alignment:
Q  17 aatacgcaaccgcaggagccattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttccaaccccatg 116  Q
    |||||||||| |||||||| ||| |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| |||||  ||||   |     
T  20090410 aatacgcaac-gcaggagcaattatgcaaacataagctgctgcatatttctggtgcaac-agctacaccttctgcaaaatctggaactt-taaccatctt 20090506  T
Q  117 caatttccaaaacccattttcctttgta 144  Q
    ||||||| ||||||||| ||||||||||    
T  20090507 caatttcaaaaacccatcttcctttgta 20090534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 20300478 - 20300263
Alignment:
Q  11 catgagaatacgcaaccgcaggagccattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttccaac 110  Q
    ||||||||| |||||| ||| |||| ||| | ||| ||||||||||||||||||||||||| ||| |||||||||||||||||| || | |||||  |||    
T  20300478 catgagaattcgcaac-gcatgagcaattctacaagcataagcttctgcatatgtctggtgcaac-agctacaccttctgcaaattcaggaactt-taac 20300382  T
Q  111 cccatgcaatttccaaaacccattttcctttgtactcggggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccggcccgtccaa 210  Q
    |   |||||| || |||| |||| |||||||||||| | |||||||||| ||| ||||  |||||  |||| ||||||| | |||||||  || ||||||    
T  20300381 catctgcaatatcaaaaatccatcttcctttgtactggtggttttattgttgaccctttaacactgaaaagctgtcctcctgacacacccaccagtccaa 20300282  T
Q  211 ttatgtatactccattctt 229  Q
    || | | || |||||||||    
T  20300281 ttgtttctattccattctt 20300263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 281 - 486
Target Start/End: Original strand, 20064125 - 20064326
Alignment:
Q  281 aactacagctggcaaatgctgcacatataccataaacatcacactatgattctcggcttgtcatgtcatgtcactttcatttctttcttctcaccatccc 380  Q
    |||||||||| ||||||||  ||||| ||||||| |||||||||| ||||| |||||| |||    ||||| |||| || |||||||| |||| ||| ||    
T  20064125 aactacagcttgcaaatgccccacatgtaccatatacatcacactctgattttcggctagtc----catgtaacttgcacttctttctcctcatcattcc 20064220  T
Q  381 atcgcgtttcatataattttccttgtgatcttagatgatagatcaaaatctcctcatcattttgtaaagtataatatatatcaatattcccttgtccatc 480  Q
    |   |||||| | |||||||||||||||  | || | |||||||||||    ||| |||||| | | |||| ||||||||| ||||||||||| ||||||    
T  20064221 aagacgtttcttctaattttccttgtgaattaagcttatagatcaaaaaaatctcctcatttgggatagtaaaatatatattaatattcccttctccatc 20064320  T
Q  481 atctcc 486  Q
    ||||||    
T  20064321 atctcc 20064326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 486
Target Start/End: Complemental strand, 20272272 - 20272071
Alignment:
Q  281 aactacagctggcaaatgctgcacatataccataaacatcacactatgattctcggcttgtcatgtcatgtcactttcatttctttcttctcaccatccc 380  Q
    |||||||| | ||||||||  |||||||||||||||||||||||| ||| ||||||||||||    ||||| || |  | ||||||||||||| ||||||    
T  20272272 aactacagattgcaaatgcgccacatataccataaacatcacactctgaatctcggcttgtc----catgtaacatgaacttctttcttctcatcatccc 20272177  T
Q  381 atcgcgtttcatataattttccttgtgatcttagatgatagatca-aaatctcctcatcattttgtaaagtataatatatatcaatattcccttgtccat 479  Q
    | ||  |||| | ||||  ||| |||||  | | |||||||||||  |||| || |||||||||||| ||| |||||||||  | || |||||| |||||    
T  20272176 accgtttttcttctaatactccatgtgaattcaaatgatagatcactaatc-ccacatcattttgtatagtgtaatatatactagtactcccttctccat 20272078  T
Q  480 catctcc 486  Q
    |||||||    
T  20272077 catctcc 20272071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 487
Target Start/End: Complemental strand, 20278016 - 20277814
Alignment:
Q  281 aactacagctggcaaatgctgcacatataccataaacatcacactatgattctcggcttgtcatgtcatgtcactttcatttctttcttctcaccatccc 380  Q
    |||||||||| ||||||||  |||||||||| |||||||||||||   | ||| ||||||||    ||||| ||  | | |||||| |||||  ||| ||    
T  20278016 aactacagcttgcaaatgccccacatataccgtaaacatcacactccaagtcttggcttgtc----catgtaacaataacttcttttttctcgtcatacc 20277921  T
Q  381 atcgcgtttcatataattttccttgtgatcttagatgatagatcaaaatctcctcatcattttgtaaagtataatatatatcaatattcccttgtccatc 480  Q
    |  | ||| | | |||||||||||||||  |||| ||| |||||| ||  ||||||||||||| ||  ||||||||||||| ||||||||||| ||| ||    
T  20277920 actgtgttgcttctaattttccttgtgaatttaggtgaaagatcacaaagtcctcatcattttctaccgtataatatatattaatattcccttctccgtc 20277821  T
Q  481 atctcct 487  Q
     ||||||    
T  20277820 gtctcct 20277814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 20262836 - 20262760
Alignment:
Q  151 gttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccggcccgtccaattatgtatactccattc 227  Q
    |||||||||||||||||| |||||| ||||||| ||| | ||||||||| ||| ||||| || | | ||||||||||    
T  20262836 gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacccgccagtccagttgtttctactccattc 20262760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 486
Target Start/End: Complemental strand, 20302205 - 20302080
Alignment:
Q  361 ttctttcttctcaccatcccatcgcgtttcatataattttccttgtgatcttagatgatagatcaaaatctcctcatcattttgtaaagtataatatata 460  Q
    ||||||||||||  ||| ||| ||| |||| | |||||||||||||||  | || | ||||||||| | | |||||| |||| | |  ||| ||||||||    
T  20302205 ttctttcttctcgtcattccaccgcatttcttctaattttccttgtgaattcaggttatagatcaagaacacctcattatttggcatcgtaaaatatata 20302106  T
Q  461 tcaatattcccttgtccatcatctcc 486  Q
    |  |||||||||||||| ||||||||    
T  20302105 tttatattcccttgtccgtcatctcc 20302080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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