View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463_high_13 (Length: 252)
Name: NF5463_high_13
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 52707496 - 52707254
Alignment:
| Q |
8 |
aatttacttaaatgtaagattctaaacacaaattctcgtttatgt--actagtgggtgtggtgttgaatagaatttaaataaacttttctttgattgttt |
105 |
Q |
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| T |
52707496 |
aatttacttaaatgtaagattctaaacacaaattctcgtttatgtgtactagtgggtgtggtgttgaagagaatttaaataaacttttctttgattgttt |
52707397 |
T |
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| Q |
106 |
aatgtctcaaatagtttggtgtgcgcttacaaatttggttaggtgtctcttgtgttccctaaaataaagtaattgttcattttcaccaaatttgtggtct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52707396 |
aatgtctcaaatagtttggtgtgcgcttacaaatttggttaggtgtctcttgtgttccctaaaataaagtaattgttcattttcaccaaatttgtggtct |
52707297 |
T |
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| Q |
206 |
actggtccacagtgtgaagtcaaaagattattttcttctcact |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52707296 |
actggtccacagtgtgaagtcaaaagattattttcttgtcact |
52707254 |
T |
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