View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5463_high_14 (Length: 242)

Name: NF5463_high_14
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5463_high_14
NF5463_high_14
[»] chr4 (3 HSPs)
chr4 (81-225)||(40820312-40820456)
chr4 (140-199)||(40825038-40825097)
chr4 (1-38)||(40820232-40820269)
[»] chr7 (10 HSPs)
chr7 (105-225)||(20293385-20293505)
chr7 (83-225)||(20272578-20272721)
chr7 (179-226)||(20282900-20282947)
chr7 (179-226)||(20278321-20278368)
chr7 (176-225)||(20230426-20230475)
chr7 (169-221)||(20090326-20090378)
chr7 (176-224)||(20302588-20302636)
chr7 (169-224)||(20063778-20063833)
chr7 (175-225)||(20262994-20263044)
chr7 (169-225)||(20169304-20169360)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 81 - 225
Target Start/End: Original strand, 40820312 - 40820456
Alignment:
Q  81 cctaactcctaagatatagaaacgagttaatgacctatgtttcaaattgtttaacaaataacacctagagcataccaagttttgtgcaggctacacgaac 180  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40820312 cctaactcctaagagatagaaacgagttaatgacctatgtttcaaattgtttaacaaataacacctagagcataccaagttttgtgcaggctacacgaac 40820411  T
Q  181 atatagatcgagtcctccactttggagttgatgtatgtcaagtag 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40820412 atatagatcgagtcctccactttggagttgatgtatgtcaagtag 40820456  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 40825038 - 40825097
Alignment:
Q  140 aacacctagagcataccaagttttgtgcaggctacacgaacatatagatcgagtcctcca 199  Q
    |||| ||||||||||||||||| ||   |||||||||||||||||||||| |||||||||    
T  40825038 aacaactagagcataccaagttctgcataggctacacgaacatatagatcaagtcctcca 40825097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40820232 - 40820269
Alignment:
Q  1 caagcctcattcgagcaatagaagtttctatctgtata 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  40820232 caagcctcattcgagcaacagaagtttctatctgtata 40820269  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 20293505 - 20293385
Alignment:
Q  105 agttaatgacctatgtttcaaattgtttaacaaataacacctagagcataccaagttttgtgcaggctacacgaacatatagatcgagtcctccactttg 204  Q
    |||||| || ||||| |||||||  |||||||||||||| ||||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  20293505 agttaacgagctatgcttcaaatgatttaacaaataacagctagaacataccaagttctgcgtaggctacacgaacatatagatcgagtcctccactttg 20293406  T
Q  205 gagttgatgtatgtcaagtag 225  Q
    |||||||||||||||||||||    
T  20293405 gagttgatgtatgtcaagtag 20293385  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 20272721 - 20272578
Alignment:
Q  83 taactcctaagatatagaaacgagttaatgacctatgtttcaaattgttt-aacaaataacacctagagcataccaagttttgtgcaggctacacgaaca 181  Q
    |||||| ||||| ||| || | ||||||||||||| |  ||||||| ||| |||||| || ||||||||||||||| |||||     ||||| |||||||    
T  20272721 taactcataagagataaaatcaagttaatgacctaagactcaaattcttttaacaaacaaaacctagagcataccaggtttttcatgggctatacgaaca 20272622  T
Q  182 tatagatcgagtcctccactttggagttgatgtatgtcaagtag 225  Q
    |||||||||||||||||  |||  || || ||||||||||||||    
T  20272621 tatagatcgagtcctcccatttcaagctgttgtatgtcaagtag 20272578  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 20282947 - 20282900
Alignment:
Q  179 acatatagatcgagtcctccactttggagttgatgtatgtcaagtagt 226  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  20282947 acatatagatcaagtcctccactttggagttgttgtatgtcaagtagt 20282900  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 20278368 - 20278321
Alignment:
Q  179 acatatagatcgagtcctccactttggagttgatgtatgtcaagtagt 226  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  20278368 acatatagatcaagtcctccactttcgagttgttgtatgtcaagtagt 20278321  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 20230475 - 20230426
Alignment:
Q  176 cgaacatatagatcgagtcctccactttggagttgatgtatgtcaagtag 225  Q
    ||||||||||| || |||||||||||||||| ||| ||||||||||||||    
T  20230475 cgaacatataggtcaagtcctccactttggaattgttgtatgtcaagtag 20230426  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 20090326 - 20090378
Alignment:
Q  169 ggctacacgaacatatagatcgagtcctccactttggagttgatgtatgtcaa 221  Q
    ||||||||||| ||||||||| ||||||||||||| |||||| | ||||||||    
T  20090326 ggctacacgaaaatatagatcaagtcctccactttcgagttgttctatgtcaa 20090378  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 20302636 - 20302588
Alignment:
Q  176 cgaacatatagatcgagtcctccactttggagttgatgtatgtcaagta 224  Q
    |||| ||||||||| ||||||||||||| |||||| |||||||||||||    
T  20302636 cgaaaatatagatcaagtcctccactttcgagttgttgtatgtcaagta 20302588  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 20063778 - 20063833
Alignment:
Q  169 ggctacacgaacatatagatcgagtcctccactttggagttgatgtatgtcaagta 224  Q
    |||||| |||| ||||||||| ||||||||  |||||||||| |||||||||||||    
T  20063778 ggctacgcgaaaatatagatcaagtcctcccatttggagttgttgtatgtcaagta 20063833  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 20263044 - 20262994
Alignment:
Q  175 acgaacatatagatcgagtcctccactttggagttgatgtatgtcaagtag 225  Q
    ||||| |||||| || |||||||||||||||| ||| ||||||||||||||    
T  20263044 acgaatatataggtcaagtcctccactttggaattgttgtatgtcaagtag 20262994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 20169304 - 20169360
Alignment:
Q  169 ggctacacgaacatatagatcgagtcctccactttggagttgatgtatgtcaagtag 225  Q
    |||||| |||||||||||||| |||||||| ||||| | ||| ||||||||| ||||    
T  20169304 ggctacgcgaacatatagatcaagtcctcctctttgaaattgttgtatgtcacgtag 20169360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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