View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5463_high_15 (Length: 237)

Name: NF5463_high_15
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5463_high_15
NF5463_high_15
[»] scaffold0741 (1 HSPs)
scaffold0741 (1-229)||(5498-5726)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-229)||(41482-41710)
[»] chr5 (1 HSPs)
chr5 (1-229)||(37635465-37635693)
[»] chr7 (1 HSPs)
chr7 (1-226)||(26176640-26176864)
[»] chr3 (2 HSPs)
chr3 (1-229)||(20304738-20304966)
chr3 (8-193)||(27539945-27540130)
[»] chr6 (1 HSPs)
chr6 (14-194)||(7654117-7654297)
[»] chr4 (1 HSPs)
chr4 (103-228)||(16599763-16599888)
[»] chr1 (1 HSPs)
chr1 (2-38)||(15200507-15200543)


Alignment Details
Target: scaffold0741 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5498 - 5726
Alignment:
Q  1 cgtcattgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaggaaaaaatagcgcatgggaaaaagcaagttcaggca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5498 cgtcactgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaagaaaaaatagcgcatgggaaaaagcaagttcaggca 5597  T
Q  101 acgaaagatacttggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccggttctta 200  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||| ||||| || |||    
T  5598 acgaaagatacttggattcgaaggactgacaacccttcagggatcggttcttcaagagcatttggtgcaacacatgacactaattcagcaccgattttta 5697  T
Q  201 tagaaaaggaaagggaagtaaatgatgat 229  Q
    |||||||||||||||||||||||||||||    
T  5698 tagaaaaggaaagggaagtaaatgatgat 5726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41482 - 41710
Alignment:
Q  1 cgtcattgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaggaaaaaatagcgcatgggaaaaagcaagttcaggca 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  41482 cgtcactgtctgcaaaagactgtatcctagaaaggaaatcacgaaggacataacagctgccaaagaaaaaatagtgcatgggaaaaagcaagttcaggca 41581  T
Q  101 acgaaagatacttggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccggttctta 200  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||    
T  41582 acgaaagatacttggattccaaggattgacaacccttcagggatcggttcttcaagagcatttggcgcaacagatcacactacttcaacaccggttctta 41681  T
Q  201 tagaaaaggaaagggaagtaaatgatgat 229  Q
    |||||||||||||||||||||||||||||    
T  41682 tagaaaaggaaagggaagtaaatgatgat 41710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 37635693 - 37635465
Alignment:
Q  1 cgtcattgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaggaaaaaatagcgcatgggaaaaagcaagttcaggca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  37635693 cgtcactgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagttgccaaagaaaaaataacgcatgggaaaaagcaagttcaggca 37635594  T
Q  101 acgaaagatacttggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccggttctta 200  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||| || |||    
T  37635593 acgaaagatacttggattccaaggactgacaacccttcagggatcggttcttcaagagcatttggcgcaacacatggcactaattcaacaccgattttta 37635494  T
Q  201 tagaaaaggaaagggaagtaaatgatgat 229  Q
    |||||||||||||||||||||||||||||    
T  37635493 tagaaaaggaaagggaagtaaatgatgat 37635465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26176640 - 26176864
Alignment:
Q  1 cgtcattgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaggaaaaaatagcgcatgggaaaaagcaagttcaggca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  26176640 cgtcactgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaagaaataatagcgcatgggaaaaagcaagttcaggca 26176739  T
Q  101 acgaaagatacttggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccggttctta 200  Q
    || |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  26176740 acaaaagatacttggattcgaaggactgaaaacccttcagggatcggttcttcaagagcatttggcgcaacacatgacactacttcagcaccgggtctta 26176839  T
Q  201 tagaaaaggaaagggaagtaaatgat 226  Q
    ||| ||||||||||||||||||||||    
T  26176840 tag-aaaggaaagggaagtaaatgat 26176864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20304966 - 20304738
Alignment:
Q  1 cgtcattgtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaggaaaaaatagcgcatgggaaaaagcaagttcaggca 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||||||||    
T  20304966 cgtcactgtctgcagaagactgtatccaagaaaggaaatcacaaaggacataacaactgccaaagaaaaaatatggcatgggaaaaagcaagttcaggca 20304867  T
Q  101 acgaaagatacttggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccggttctta 200  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||    
T  20304866 acgaaagatacttggattccaaggactaacaacccttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccgattctta 20304767  T
Q  201 tagaaaaggaaagggaagtaaatgatgat 229  Q
    |||||||||||||||||||||||||||||    
T  20304766 tagaaaaggaaagggaagtaaatgatgat 20304738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 27540130 - 27539945
Alignment:
Q  8 gtctgcagaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaggaaaaaatagcgcatgggaaaaagcaagttcaggcaacgaaag 107  Q
    ||||| |||||| ||||||||||||||| || ||||||||  | |||||||||||||||| ||||||||| ||| || |||||||||||| ||| |||||    
T  27540130 gtctgtagaagattgtatcctagaaaggtaaacacaaaggtaacaacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaag 27540031  T
Q  108 atacttggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccg 193  Q
    |||| |||||||||||||| || |||||||||  || ||| |||||   ||| |||||| ||||| |||| |||||| || |||||    
T  27540030 atacatggattccaaggaccgacaacccttcagagaccggctcttccctagcttttggcacaacaaatgacactactccagcaccg 27539945  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 7654117 - 7654297
Alignment:
Q  14 agaagactgtatcctagaaaggaaatcacaaaggacataacagctgccaaggaaaaaatagcgcatgggaaaaagcaagttcaggcaacgaaagatactt 113  Q
    |||||| ||||||||||||||| || ||||||||  | |||||||||||||||| ||||||||| ||| || ||||||||| || ||| ||||||||| |    
T  7654117 agaagattgtatcctagaaaggtaaacacaaaggtaacaacagctgccaaggaacaaatagcgcttggaaagaagcaagtttagacaaagaaagatacat 7654216  T
Q  114 ggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccgg 194  Q
    |||||||||||||||| ||||||||| ||||||  |||||    || |||||||||||| |||| ||||||||| ||||||    
T  7654217 ggattccaaggactgacaacccttcagggatcgactcttccctggcttttggcgcaacaaatgacactacttcagcaccgg 7654297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 16599888 - 16599763
Alignment:
Q  103 gaaagatacttggattccaaggactgagaacccttcaaggatcggttcttcaagagcatttggcgcaacacatgaaactacttcaacaccggttcttata 202  Q
    ||||||||| ||||||||||||||||| || |||||| ||||||| |||||   ||| |||||||||||| |||| ||||||||| || ||| | || |     
T  16599888 gaaagatacatggattccaaggactgacaagccttcagggatcggctcttccctagcttttggcgcaacaaatgacactacttcagcatcggattttgtg 16599789  T
Q  203 gaaaaggaaagggaagtaaatgatga 228  Q
    |||  ||||||||||  |||||||||    
T  16599788 gaagtggaaagggaaacaaatgatga 16599763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 15200543 - 15200507
Alignment:
Q  2 gtcattgtctgcagaagactgtatcctagaaaggaaa 38  Q
    |||||||||||||||||| |||| |||||||||||||    
T  15200543 gtcattgtctgcagaagattgtaccctagaaaggaaa 15200507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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