View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463_high_4 (Length: 505)
Name: NF5463_high_4
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 39743158 - 39743646
Alignment:
| Q |
1 |
gcactcaaggagatagagaggctaacaatgaatgctggtgaggttcaagataaccttttgaaacatatcttaacacagaataaggaaactgagtatttaa |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39743158 |
gcactcaaggagatagagaagctaacaatgaatgctggtgaggttcaagataaccttttgaaacagatcttaacacagaataaggaaactgagtatttaa |
39743257 |
T |
|
| Q |
101 |
atcagtatatgaagagagaaacatttaaaacagatttaaaagagtttaagcgttgtgttccagttattagctacgaaggaatctttccatatatacagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39743258 |
atcagtatatgaagagagaaacatttaaaacagatttaaaagagtttaagcgttgtgttccagttattagttacgaaggaatctttccatatatacagag |
39743357 |
T |
|
| Q |
201 |
aattgcaaatggtgaagtctcttctctcatcactggtcaaccaataacagaaatgttatgcaggtaactattttgactctgctgctagtgctggtattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39743358 |
aattgcaaatggtgaagtctcttctctcatcactggtcaaccaataacagaaatgttatgcaggtaactattttgactctgctgctagtgctggtattta |
39743457 |
T |
|
| Q |
301 |
attttctcattttactataagtttatagttgtgttaatttttatttttgaagaatagttgtattaattattttgttaacaatcttaatcgtatggtatgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39743458 |
attttctcattttactataagtttatagttgtgttaatttttatttttgaagaatagttgtattaattattttgttaacaatcttaatcatatggtatgt |
39743557 |
T |
|
| Q |
401 |
gcatgcagttcaggaacatcagctggagagcctaaattgatgccatcaattgctgaagatcttgatcgacgtacctttgtgtacaatct |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39743558 |
gcatgcagttcaggaacatcagctggagagcctaaattgatgccatcaattgctgaagatcttgatcgacgtacctttgtgtacaatct |
39743646 |
T |
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