View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463_low_1 (Length: 904)
Name: NF5463_low_1
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 235 - 547
Target Start/End: Complemental strand, 42518444 - 42518135
Alignment:
| Q |
235 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaaatggaaccaataata |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518444 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatatcaacaaaatggaaccaata--- |
42518348 |
T |
|
| Q |
335 |
gtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtttggt |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518347 |
gtccaaactctaaagggttcattttctgatgcatcaagagggatgtaaagaaaagacaaatcctccctaaagttctttttattatcatatatagtttggt |
42518248 |
T |
|
| Q |
435 |
gaaaaatattttaaactagaaataaggctctcaattttcaatgatatatcgcaaattaactgtagatgagattaaatttaaaacctagagaataatggaa |
534 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42518247 |
gaaaaatattttaaacttgaaataaggctctcaattttcaatgatagatcgcaaattaactgtagatgagattaaatttaaaacccagagaataatggaa |
42518148 |
T |
|
| Q |
535 |
cacatagcttctg |
547 |
Q |
| |
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||||||||||||| |
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| T |
42518147 |
cacatagcttctg |
42518135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 620 - 882
Target Start/End: Complemental strand, 42518095 - 42517833
Alignment:
| Q |
620 |
cataagacgatccataagtttcatgcaactaattattaatagacaattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcac |
719 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518095 |
cataagacgatccataagtttcatgcaactaattattaaaagacaattttaagtatatgattgagaaaaatgagataatatatagttgagatagactcac |
42517996 |
T |
|
| Q |
720 |
ataagcacgttatgtgcaaccaacttaatcacactgattgcctaaagactaataagtaatcctcgatttggtaattgaaagaaaaatcaagtgattgaat |
819 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42517995 |
ataagcacgttatgtgcaaccaacttaatcacaccgattgcctaaagactaataagtaatcctcgaattggtaattgaaagaaaaatcaagtgattgaat |
42517896 |
T |
|
| Q |
820 |
ttatatatataaaattattgtcatacaaaagaggaattcatagtaaatgaatttgagccatat |
882 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
42517895 |
ttatatatatagaattattgtcatacaggagaggaattcatagcaaatgaatttgggccatat |
42517833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 42518810 - 42518666
Alignment:
| Q |
4 |
gatggacatcatcaacttttgaataatttgatattgtagaaattgatgctagttgagataaatttttactataatttacgataaattgagtagtaacgta |
103 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42518810 |
gatggacataatcaacttttgaataatttgatattgtagaaattgatgctagttgagatagatttttactataatttacgataaattgagtagtaacgta |
42518711 |
T |
|
| Q |
104 |
actagtaagtaggctgatgatgtacttttacaacatttgttttct |
148 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518710 |
aatagtaagtaggctgatgatgtacttttacaacatttgttttct |
42518666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 181 - 536
Target Start/End: Complemental strand, 42509087 - 42508724
Alignment:
| Q |
181 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaa-----------ttagtataatactcatcaaattaattaattgaaatctaaacaatcg |
269 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||| |
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| T |
42509087 |
cacaagagagaattaatgtgtcgaattaagtgtgcataatgaaattatactacattagt-tatttctcatcaaattaattaattgaaatctaaacaatcg |
42508989 |
T |
|
| Q |
270 |
tgtacctatgaaaaaa------tcttaacaatctaaggaatgataatatcaacaaaatggaaccaataatagtccaaactctaaagggttcattttctga |
363 |
Q |
| |
|
||||| || |||||| |||||||||| |||||||||||||||||||||||||||| |||| | | ||||| |||||||||||||| |
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| T |
42508988 |
tgtacttaaaaaaaaaaaaaaatcttaacaatataaggaatgataatatcaacaaaatggagccaacagt----------ctaaatggttcattttctga |
42508899 |
T |
|
| Q |
364 |
tgcatcaagagggatgtaaagaaaagccaaatcctccctaaagttctttttattatcatatatagtttggtgaaaaatattttaaactagaaataaggct |
463 |
Q |
| |
|
| |||||||| |||||||| |||||||||||||||||| ||||||||||||| |||||| ||||| ||| ||||||||||||| |||| ||| ||| | |
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| T |
42508898 |
tacatcaagaaggatgtaatgaaaagccaaatcctcccaaaagttctttttactatcatgtatag-ttgatgaaaaatatttttaacttaaaacaag--t |
42508802 |
T |
|
| Q |
464 |
ctcaattttcaatgatatat----cgcaaattaactgtagatgagattaaatttaaaacctagag-aataatggaaca |
536 |
Q |
| |
|
||||||||| |||||| || | ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
42508801 |
ctcaattttatatgatagattgtatgtaaattaaaggtagatgagattaaatttaaaacctagagaaataatggaaca |
42508724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 566 - 748
Target Start/End: Complemental strand, 42524689 - 42524506
Alignment:
| Q |
566 |
attcaataagagataatttgtatatcaatcttaataaagtaaatggatgtcttccataagacgatccataagtttcatgcaactaat--tattaatagac |
663 |
Q |
| |
|
||||||||||||| |||||||| |||||||| | |||||||| |||||||| ||||||||||||||||| ||||||||| |||| |||||| |||| |
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|
| T |
42524689 |
attcaataagagacggtttgtataacaatcttattgaagtaaatagatgtcttgcataagacgatccataaatttcatgcatttaatattattaagagac |
42524590 |
T |
|
| Q |
664 |
aattttaagtatatcattgagaaaaatgagataatatatagttgagatagactcacataagcacgttatgtgcaaccaacttaat |
748 |
Q |
| |
|
||||| | |||||| ||| |||||||| ||||||| | |||||||| ||||||||||||||| | |||||||||||||||||||| |
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|
| T |
42524589 |
aatttga-gtatattatttagaaaaattagataatgtgtagttgagttagactcacataagctccttatgtgcaaccaacttaat |
42524506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 791 - 889
Target Start/End: Complemental strand, 42524509 - 42524411
Alignment:
| Q |
791 |
taattgaaagaaaaatcaagtgattgaatttatatatataaaattattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaat |
889 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
42524509 |
taattgaaagaaaaatcaactaattgaatttatatatataaaatttttgtcatacagcagaggaattcgtagtaaatgaatttgagccatatgccaaat |
42524411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 582 - 725
Target Start/End: Complemental strand, 42508567 - 42508423
Alignment:
| Q |
582 |
tttgtatatcaatcttaataaagtaaatggatgtcttccataagacgatccataagtttcatgcaacta--attattaatagacaattttaagtatatca |
679 |
Q |
| |
|
|||||||| |||||||| | |||||||| |||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||| ||||||| | |
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|
| T |
42508567 |
tttgtataacaatcttattgaagtaaatagatgtcttgcataagacgatccataagtttcatgcatctaatattattaagagacaa-tttgagtatatta |
42508469 |
T |
|
| Q |
680 |
ttgagaaaaatgagataatatatagttgagatagactcacataagc |
725 |
Q |
| |
|
|| |||||||| ||||||| | |||||||| ||||||||||||||| |
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|
| T |
42508468 |
tttagaaaaattagataatgtgtagttgagttagactcacataagc |
42508423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 791 - 889
Target Start/End: Complemental strand, 42508395 - 42508295
Alignment:
| Q |
791 |
taattgaaagaaaaatcaagtgattgaatttatatatataaa--attattgtcatacaaaagaggaattcatagtaaatgaatttgagccatatgccaaa |
888 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42508395 |
taattgaaagaaaaatcaactaagtgaatttatatatatatataattattgtcatacagaagaggaattcatagtaaatgaatttgagccatatgccaaa |
42508296 |
T |
|
| Q |
889 |
t |
889 |
Q |
| |
|
| |
|
|
| T |
42508295 |
t |
42508295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 42509411 - 42509329
Alignment:
| Q |
20 |
ttttgaataatttgatattgtagaaattgatgctagttgagata-aattt--ttactataatttacgataaattgagtagtaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||| |
|
|
| T |
42509411 |
ttttgaataatttgatattgtagaaattgatgctagttgagatagaattttattactataatttgcgataatttgagtagtaa |
42509329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 42518533 - 42518478
Alignment:
| Q |
181 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42518533 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
42518478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 42509305 - 42509237
Alignment:
| Q |
121 |
tgatgtacttttacaacatttgttttcttaaacat-cagatactcgt---agagtacaactcaacacaa |
185 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | || |||||| ||||||||||||||||||| |
|
|
| T |
42509305 |
tgatgtacttttacaacgtttgttttcttaaacatactgaaactcgtagaagagtacaactcaacacaa |
42509237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 496 - 536
Target Start/End: Complemental strand, 42524869 - 42524828
Alignment:
| Q |
496 |
gtagatgagattaaatttaaaacctagag-aataatggaaca |
536 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42524869 |
gtagatgagattaaatttaaaacctagagaaataatggaaca |
42524828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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