View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5463_low_11 (Length: 268)

Name: NF5463_low_11
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5463_low_11
NF5463_low_11
[»] chr8 (1 HSPs)
chr8 (7-252)||(44728714-44728959)
[»] chr1 (2 HSPs)
chr1 (141-252)||(12634254-12634367)
chr1 (124-201)||(42263737-42263817)
[»] chr5 (2 HSPs)
chr5 (124-227)||(28274091-28274197)
chr5 (124-227)||(28270851-28270957)
[»] chr7 (2 HSPs)
chr7 (177-251)||(23757365-23757439)
chr7 (124-239)||(20462435-20462553)
[»] chr3 (2 HSPs)
chr3 (123-174)||(8433158-8433209)
chr3 (205-249)||(34302689-34302733)
[»] chr4 (1 HSPs)
chr4 (140-176)||(965369-965405)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 252
Target Start/End: Original strand, 44728714 - 44728959
Alignment:
Q  7 caatggagtaacaactaatctagcttgcataggaagtgtcgcatcaagatcaggcgtatcaaaaagtgttggtaatgtttaaagtacacccgttcattgg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  44728714 caatggagtaacaactaatctagcttgcataggaagtgtcgcatcaggatcaggcgtatcaaaaagtgttggtaatgtttaaagtacacccattaattgg 44728813  T
Q  107 agatagagtgtgcatcatgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaatagacttttagtgaaaggatgtattgcttaaata 206  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44728814 agctagagtgtgcatcatgtgagaagaattcccaaaatataaatttgaaaagttgcaatggttgaatagacttttagtgaaaggatgtattgcttaaata 44728913  T
Q  207 ttgaagcaatgtaatcattgtgtctattcatgacaaaactctttca 252  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  44728914 ttgaagcaatgtaatcattgtgtctattcatgacgaaactctttca 44728959  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 12634254 - 12634367
Alignment:
Q  141 aaatataaatttgaaaagtagcaatggttgaataga--cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaatcattgtgtctattcatg 238  Q
    ||||||||||||||||| | |||||| || ||||||  |||||| ||||||||| || || || | |||||||||||||||| |||||||||||||||||    
T  12634254 aaatataaatttgaaaaattgcaatgattaaatagagacttttaatgaaaggatataatgtttgactattgaagcaatgtaaccattgtgtctattcatg 12634353  T
Q  239 acaaaactctttca 252  Q
    |  |||||||||||    
T  12634354 aagaaactctttca 12634367  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 42263817 - 42263737
Alignment:
Q  124 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaataga---cttttagtgaaaggatgtattgctt 201  Q
    ||||| ||||||| |||||||||||||||||||||| |||||| |||||||||    ||| ||||||| ||||||||||||    
T  42263817 tgtgaaaggaatttccaaaatataaatttgaaaagttgcaatgattgaatagagacatttaagtgaaaagatgtattgctt 42263737  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 28274197 - 28274091
Alignment:
Q  124 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaata-ga--cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaa 220  Q
    |||||||| || | |||||||||||||||| ||||| |||||||||||||| ||  |||||||||||| |||||||||||| | ||||||| ||||||||    
T  28274197 tgtgagagaaacttccaaaatataaatttggaaagttgcaatggttgaatatgaaccttttagtgaaacgatgtattgcttgactattgaaacaatgtaa 28274098  T
Q  221 tcattgt 227  Q
     ||||||    
T  28274097 ccattgt 28274091  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 28270957 - 28270851
Alignment:
Q  124 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaata-ga--cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaa 220  Q
    |||||||| || | |||||||||||||||||||||| |||||| ||||||| ||  |||| ||||||| |||||||||||| | ||||||| ||||||||    
T  28270957 tgtgagagaaacttccaaaatataaatttgaaaagttgcaatgattgaatatgaacctttcagtgaaatgatgtattgcttgactattgaaacaatgtaa 28270858  T
Q  221 tcattgt 227  Q
     ||||||    
T  28270857 ccattgt 28270851  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 23757439 - 23757365
Alignment:
Q  177 cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaatcattgtgtctattcatgacaaaactctttc 251  Q
    |||| |||||||||||||| ||||| | | |||||||||||||| |||||||||||||||| |  ||||||||||    
T  23757439 ctttcagtgaaaggatgtaatgcttgattcttgaagcaatgtaaccattgtgtctattcataaagaaactctttc 23757365  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 20462435 - 20462553
Alignment:
Q  124 tgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaataga---cttttagtgaaaggatgtattgcttaaatattgaagcaatgtaa 220  Q
    |||||||| |||| |||||| ||||||||||||||||  |||  ||||||| |   |||| ||||||| |||| | ||||| | ||||| | ||||||||    
T  20462435 tgtgagagaaatttccaaaaaataaatttgaaaagtatgaatatttgaataaagacctttaagtgaaaagatgcaatgcttgactattggaccaatgtaa 20462534  T
Q  221 tcattgtgtctattcatga 239  Q
     |||| |||| ||||||||    
T  20462535 ccattatgtcaattcatga 20462553  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 8433209 - 8433158
Alignment:
Q  123 atgtgagaggaattcccaaaatataaatttgaaaagtagcaatggttgaata 174  Q
    |||||||||||||| |||||||||||| ||||||||| ||||||||| ||||    
T  8433209 atgtgagaggaatttccaaaatataaacttgaaaagttgcaatggttaaata 8433158  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 34302689 - 34302733
Alignment:
Q  205 tattgaagcaatgtaatcattgtgtctattcatgacaaaactctt 249  Q
    |||||||||||||||| ||||||||||||| ||||  ||||||||    
T  34302689 tattgaagcaatgtaaccattgtgtctatttatgaagaaactctt 34302733  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 965369 - 965405
Alignment:
Q  140 aaaatataaatttgaaaagtagcaatggttgaataga 176  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  965369 aaaatataaatttgaaaagttgcaatggttaaataga 965405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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