View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5463_low_13 (Length: 252)
Name: NF5463_low_13
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463_low_13 |
 | |
|
| [»] scaffold0741 (1 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0065 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold1590 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0741 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0741
Description:
Target: scaffold0741; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 5281 - 5508
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5281 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgtttggacactacgcgagaattctagttgatatggattt |
5380 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5381 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggatgcccgacttctgttctcactgt |
5480 |
T |
|
| Q |
225 |
cagaatatcggccatgacgtcattgtct |
252 |
Q |
| |
|
||||||||| |||||||||||| ||||| |
|
|
| T |
5481 |
cagaatatcagccatgacgtcactgtct |
5508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 20305182 - 20304956
Alignment:
| Q |
26 |
ggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggatttc |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
20305182 |
ggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgtttggacactacgcgagaattctagttgatatggattcc |
20305083 |
T |
|
| Q |
126 |
tcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgtc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20305082 |
tcccgtaagatttttcatgaaattgttgttgagagggaatgatatgctttcccggttgtcgtggcctatgaatggatgcccgacttctgttctcactgtc |
20304983 |
T |
|
| Q |
226 |
agaatatcggccatgacgtcattgtct |
252 |
Q |
| |
|
||||||||||||||||||||| ||||| |
|
|
| T |
20304982 |
agaatatcggccatgacgtcactgtct |
20304956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 27540354 - 27540133
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||| || |||||||| ||||||||||||||||| |
|
|
| T |
27540354 |
gggagattgcaagtgcggtgggcacccctcttgtgatagacaacgcgacatcaaagagattgtttgaacattatgcgagaatactagttgatatggattt |
27540255 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
27540254 |
ctcctgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgtcgtggcctatgaatggatgcccgatttttgttctcactgt |
27540155 |
T |
|
| Q |
225 |
cagaatatcggccatgacgtca |
246 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
27540154 |
cagaatatcgggcatgacgtca |
27540133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 25808793 - 25808567
Alignment:
| Q |
27 |
gagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggatttct |
126 |
Q |
| |
|
||||||||| | ||| |||| || |||||||||||||||||||| || |||||| |||||| |||| || || |||||||| |||||||||||||||| |
|
|
| T |
25808793 |
gagattgcaggagcgttggggacacctcttgtgatagacaatgcaacgacaaagcatttgtttggacattatgcaagaattcttgttgatatggatttct |
25808694 |
T |
|
| Q |
127 |
cccgtaagat-ttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgtc |
225 |
Q |
| |
|
|||||||| | ||||||||| |||||||| || |||||||| | ||| || |||||| ||||||| |||||| || | || || |||||||| |||| |
|
|
| T |
25808693 |
cccgtaagttattttcatgagattgttgtcgaaagggaagggtttgccttcacggttgcggtggcctatgaatggttgactgatttttgttctcattgtc |
25808594 |
T |
|
| Q |
226 |
agaatatcggccatgacgtcattgtct |
252 |
Q |
| |
|
||||||| || || ||||||| ||||| |
|
|
| T |
25808593 |
agaatattggtcacgacgtcactgtct |
25808567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 14243173 - 14243096
Alignment:
| Q |
93 |
cactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatat |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | | |||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
14243173 |
cactacgctagaattctagttgatatggattttgcacttaagctctttcatgaaattgttgttgaaagggaaggatat |
14243096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 2290603 - 2290382
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
|||||||||||| ||||||||| || |||||| |||| || ||||| || | ||| | |||||| | || || || ||||||||||||| |||||||| |
|
|
| T |
2290603 |
gggagattgcaattgcggtgggcactcctcttttgattgataatgcaacgtcgaagcgtttgtttggccattatgcacgaattctagttgacatggattt |
2290504 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
||| | |||| | ||||||||||| | || || |||||||| ||||| || |||| | ||||| | ||||||||| | || | |||||| |||||| |
|
|
| T |
2290503 |
ctcacataagttatttcatgaaatcatcgtcgaaagggaagggtatgccttcacggtggaggtggcttatgaatggatgtctgattactgttcacactgt |
2290404 |
T |
|
| Q |
225 |
cagaatatcggccatgacgtca |
246 |
Q |
| |
|
|||||||| || ||||| |||| |
|
|
| T |
2290403 |
cagaatattggacatgatgtca |
2290382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 26176423 - 26176650
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26176423 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgtttggacactacgcgagaattctagttgatatggattt |
26176522 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
26176523 |
cacccgtaagatttttcatgaaattgttgttgacagggaaggatatgctttcccggttgtcgtggcctatgaatggattcccgacttctgttctcactgt |
26176622 |
T |
|
| Q |
225 |
cagaatatcggccatgacgtcattgtct |
252 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
26176623 |
cagaatatcggccatgacgtcactgtct |
26176650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 41265 - 41492
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41265 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgtttggacactacgcgagaattctagttgatatggattt |
41364 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||| ||||||||| |
|
|
| T |
41365 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgtcgtggtctatgaatggatgcccaacttctgctctcactgt |
41464 |
T |
|
| Q |
225 |
cagaatatcggccatgacgtcattgtct |
252 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |
|
|
| T |
41465 |
cagaatatcgtccatgacgtcactgtct |
41492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 252
Target Start/End: Complemental strand, 37635910 - 37635683
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37635910 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgtttggacactacgcgagaattctagttgatatggattt |
37635811 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
37635810 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgttttcctggttgccgtggcctatgaatggatgctcgacttctgttctcactgt |
37635711 |
T |
|
| Q |
225 |
cagaatatcggccatgacgtcattgtct |
252 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
37635710 |
cagaatatcggccatgacgtcactgtct |
37635683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 21346185 - 21346124
Alignment:
| Q |
105 |
attctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaagg |
166 |
Q |
| |
|
||||| ||||||||||||||||| || ||| | ||||||||||||| ||| || |||||||| |
|
|
| T |
21346185 |
attctggttgatatggatttctctcgcaagctctttcatgaaattgatgtcgaaagggaagg |
21346124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 16600114 - 16599892
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaac-----aaagagattgttttgacactacgcgagaattctagttgatatg |
119 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |||||| | |||||| |||||| |||| || |||||| | |||||||||||| |
|
|
| T |
16600114 |
gggagattgcaagtgcagtgggcacccctcttgtgatagacaacgcgacatcaaattaaagagtttgtttggacattatgcgagagtactagttgatatg |
16600015 |
T |
|
| Q |
120 |
gatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| || |||| ||||| |
|
|
| T |
16600014 |
gatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggatgccggatttctattctc |
16599915 |
T |
|
| Q |
220 |
actgtcagaatatcggccatgac |
242 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
16599914 |
actgtcagaatatcgggcatgac |
16599892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 7653892 - 7654104
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| |||| || | |||||| ||||||||||||||||| |
|
|
| T |
7653892 |
gggagattgcaagtgcagtgggcacccctcttgtgatagacaacacgacatcaaagagattgtttggacattatgtgagaatactagttgatatggattt |
7653991 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||| ||||||||||| || ||||||| ||||||| |
|
|
| T |
7653992 |
ctcccgtaagatttttcatgaaattgttggtgagagggaag-----gctttcccggttgccgtggcctatgaatggatgccggatttctgttgtcactgt |
7654086 |
T |
|
| Q |
225 |
cagaatatcggccatgac |
242 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
7654087 |
cagaatatcgggcatgac |
7654104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 15219745 - 15219521
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| || | ||||| || | ||| |||| || || ||||||||||| |||||||| || |
|
|
| T |
15219745 |
gggagattgcaagtgcggtgggcacccctcttgtgatcgacaattcgtcgtcaaagcgactatttggacattatgcaagaattctagtcgatatggactt |
15219646 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || | ||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
15219645 |
ctcccgtaagatttttcatgaaattgttgtcgagagggaaggatatgctttcccgatttttgtggcctacaaatggatgcccgatttctgttctcactgt |
15219546 |
T |
|
| Q |
225 |
cagaatatcggccatgacgtcattg |
249 |
Q |
| |
|
|||||||||| ||||| ||||||| |
|
|
| T |
15219545 |
aagaatatcgggcatgatgtcattg |
15219521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 25 - 252
Target Start/End: Complemental strand, 15200763 - 15200534
Alignment:
| Q |
25 |
gggagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggattt |
124 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| || ||||| |||| || || ||||||||||| |||||||| || |
|
|
| T |
15200763 |
gggagattgcaagtgcggtgggcacccctcttgtgatcgacaatgcgacgtcaaagcgactgtttagacattatgcaagaattctagtcgatatggactt |
15200664 |
T |
|
| Q |
125 |
ctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgt |
224 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| || || | ||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
15200663 |
ctcccgtaagatttttcacgaaattgttgtcgagagggaaggatatgctttcccaatttttgtggcctacaaatggatgcccgatttctgttctcactgt |
15200564 |
T |
|
| Q |
225 |
caga--atatcggccatgacgtcattgtct |
252 |
Q |
| |
|
||| ||||||| ||||| |||||||||| |
|
|
| T |
15200563 |
aagatcatatcgggcatgatgtcattgtct |
15200534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 12398464 - 12398269
Alignment:
| Q |
51 |
cctcttgtgatagacaatgcgacaacaaagagattgttttgacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattg |
150 |
Q |
| |
|
||||||||||||||||| ||||| |||||| | |||||| |||| || || |||||||| |||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
12398464 |
cctcttgtgatagacaacgcgacgacaaagcgtttgtttggacattatgcaagaattcttgttgatatggatttctcccgtaagttatttcatgaaattg |
12398365 |
T |
|
| Q |
151 |
ttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtca |
246 |
Q |
| |
|
||||||| | |||||| | ||| || |||||| ||||||| |||||| |||| || ||||||||||| ||| ||||||| || || ||||||| |
|
|
| T |
12398364 |
ttgttgaaaaggaagggtttgccttcacggttgcggtggcctatgaatggttgcctgatttctgttctcattgttagaatattggtcacgacgtca |
12398269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 29803748 - 29803878
Alignment:
| Q |
111 |
gttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgcttttccggttgtcgtggcctgcgaatggatgcccgact |
210 |
Q |
| |
|
||||||||||||||||| || || | ||||| |||||||| || || |||||||| ||||| |||| ||| ||||||| |||||| | || || | |
|
|
| T |
29803748 |
gttgatatggatttctctcgcaaactctttcacgaaattgtggtcgaaagggaagggtatgcctttctggtgacggtggcctatgaatggttaccagatt |
29803847 |
T |
|
| Q |
211 |
tctgttctcactgtcagaatatcggccatga |
241 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |
|
|
| T |
29803848 |
tctgttctcactgtcagaatatagggcatga |
29803878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1590 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1590
Description:
Target: scaffold1590; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 1280 - 1326
Alignment:
| Q |
27 |
gagattgcaagtgcggtgggaacccctcttgtgatagacaatgcgac |
73 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||| ||||| |
|
|
| T |
1280 |
gagattgcaagtgcggtgggcacccctcttttgattgacaaggcgac |
1326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University