View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463_low_3 (Length: 508)
Name: NF5463_low_3
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 172 - 499
Target Start/End: Original strand, 42998144 - 42998473
Alignment:
| Q |
172 |
taccacttgtattacaccatatacgtagacatagccacatacaattcccatctgaactctcacatgcattgcaacaaagattgtatttaattcactatac |
271 |
Q |
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| T |
42998144 |
taccacttatattacaccatatacgtagacatagccacatacaattcccatctgaactctcacatgcattgcaacaaagattgtatttaattcactatac |
42998243 |
T |
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| Q |
272 |
attaattgatgcatttttatactannnnnnnnn--ccgacaattagaagtttattattgatatggtctaacaaaaaggttagccagaaaaattcaaatat |
369 |
Q |
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| T |
42998244 |
attaattgatgtatttttatactattttttttcttccgacaattagaagtttattattgatatggtctaacaaaaaggttagccagaaaaattcaaatat |
42998343 |
T |
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| Q |
370 |
ttaaggttagccagagattatatataagtcatctataagctatgatcacaagaattattgagctcctcttggatgtcatcttccaattctgcttggaaac |
469 |
Q |
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| T |
42998344 |
ttaaggttagctagagattatatataagtcatctataagctatgatcacaagaattattgagctcctcttggatgtcatcttccaagtctgcttggaaac |
42998443 |
T |
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| Q |
470 |
cgatgttcacatatggaagagaagtattat |
499 |
Q |
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| T |
42998444 |
cgatgttcacatatggaagagaagtattat |
42998473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 42997990 - 42998074
Alignment:
| Q |
19 |
ggataacttcataactttatgtcttcttaaacacatcttgtgttggagacattttggtttgataatataattcattttaacattt |
103 |
Q |
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| T |
42997990 |
ggataacttcataactttatgtcttcttaaacacatcttgtgttggagacattttggtttgataatataattcattttagcattt |
42998074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 4154965 - 4155022
Alignment:
| Q |
38 |
tgtcttcttaaacacatcttgtgttggagacattttggtttgataatataattcattt |
95 |
Q |
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| T |
4154965 |
tgtcttctgaaacacatcttgtagcgaagaccttttggtttgctaatataattcattt |
4155022 |
T |
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