View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463_low_6 (Length: 425)
Name: NF5463_low_6
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Complemental strand, 2555649 - 2555243
Alignment:
| Q |
16 |
agatggtaaagaggagaggtcgctgacctgatacctggaagaagacaaaacattattttcattttcataacagatgcaaacttccaaagatgaaagtgaa |
115 |
Q |
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| T |
2555649 |
agatggtaaagaggagaggtcgttgacctgatacatggaagaagacaaaacattattttcattttcataacagatgcaaacttccaaagatgaaagtgaa |
2555550 |
T |
|
| Q |
116 |
gtgaggcatacaacgtattgaagagaaaaagaaaggaa------gaactggagaattagtgtcattcttattcagaagaaagcttgcagcagacaaagga |
209 |
Q |
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| T |
2555549 |
gtgaggcatacaacgcattgaagagaaaa-gaaaggattaatgtgaactggagaattagtgtcattcttattcagaagaaagtttgcagcagacaaagga |
2555451 |
T |
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| Q |
210 |
attgaaaggattaatgtgtgagaaaattgctttcaattgggtttgtattcttaattaaattagtatgttggaaaaaccaaaaatgtggaaattgaatggt |
309 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2555450 |
attgaaaggattaatgtgtgagaaaattgctctcaatcgggtttgtatccttaattaaattagtatgttggaaaaacaaaaaatgtggaaattgaatggt |
2555351 |
T |
|
| Q |
310 |
tggaggtaccttgggaagaagaagtggtggaaagatcctataagacttattcgggaagatcctatataacacatgtatacatgggcatgggaaagagagt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2555350 |
tggaggtaccttgggaagaagaagtggtggaaagatcctataagactgattcgggaagatcctatataacacatgtatacatgagcatgggaaagagagt |
2555251 |
T |
|
| Q |
410 |
agaataat |
417 |
Q |
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|||||||| |
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| T |
2555250 |
agaataat |
2555243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 42656035 - 42655990
Alignment:
| Q |
372 |
tatataacacatgtatacatgggcatgggaaagagagtagaataat |
417 |
Q |
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| T |
42656035 |
tatatgacacatgtatatatgggcatgggaaagagagtagaataat |
42655990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 22625157 - 22625198
Alignment:
| Q |
375 |
ataacacatgtatacatgggcatgggaaagagagtagaataa |
416 |
Q |
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| T |
22625157 |
ataacacatgtatacatgggcatgggaaagatagtagaataa |
22625198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 21762319 - 21762280
Alignment:
| Q |
378 |
acacatgtatacatgggcatgggaaagagagtagaataat |
417 |
Q |
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| T |
21762319 |
acacatgtatatatgggcatgggaaagagagtagaataat |
21762280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 826565 - 826602
Alignment:
| Q |
380 |
acatgtatacatgggcatgggaaagagagtagaataat |
417 |
Q |
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| T |
826565 |
acatgtatatatgggcatgggaaagagagtagaataat |
826602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 24257982 - 24257942
Alignment:
| Q |
376 |
taacacatgtatacatgggcatgggaaagagagtagaataa |
416 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||| |
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| T |
24257982 |
taacgcatgtatgtatgggcatgggaaagagagtagaataa |
24257942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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