View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5463_low_7 (Length: 417)
Name: NF5463_low_7
Description: NF5463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5463_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 37089560 - 37089958
Alignment:
| Q |
1 |
atctatgagtactggtctttttctatgtacactttcaatgggatattttgttagtagtttattggtttcaattgtggacaaagtaagcaagaaaagatgg |
100 |
Q |
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| T |
37089560 |
atctatgagtactggtctttttctatgtacactttcaatgggatattttgttagtagtttattggtttcaattgtggacaaagtaagcaagaaaagatgg |
37089659 |
T |
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| Q |
101 |
ttgaagagtaatcttgataagggtaagttagattacttctattggttactagcaattcttggagtgctgaattttgtactttttcttgtcttatcaatga |
200 |
Q |
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| T |
37089660 |
ttgaagagtaatcttgataagggtaagttagattacttctattggttactagcaattcttggagtgctgaattttgtactttttcttgtcttatcaatga |
37089759 |
T |
|
| Q |
201 |
ggcatcaatacaaagttcaacacaacaatattgagagtaatgacaatgtagagaaagagcttgtgcttgtgaatgaagtcaaaattggtgttgatgggaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
37089760 |
ggcatcaatacaaagttcaacacaacaatattgagagtaatgacaatgtagagaaagagcttgtgcttgtgaatgaagtcaaagttggaattgatgggaa |
37089859 |
T |
|
| Q |
301 |
ggaagaagcata-aaaattattttgtttggccttatagattgtgtgcaggaggtaaatataatgcctcacgtttgttgattttgggtgattagtagaaca |
399 |
Q |
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| T |
37089860 |
ggaagaagtatagagaatcattttgtttggcattatagat--tgtgcaggaggtaaatataatgcctcatgtttgttgattttgagtgatttgtagaaca |
37089957 |
T |
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