View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5464-Insertion-1 (Length: 781)
Name: NF5464-Insertion-1
Description: NF5464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5464-Insertion-1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 17 - 577
Target Start/End: Complemental strand, 2429497 - 2428942
Alignment:
| Q |
17 |
gcttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2429497 |
gcttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccaaaaaaa |
2429398 |
T |
|
| Q |
117 |
ccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2429397 |
ccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttct |
2429298 |
T |
|
| Q |
217 |
gatcaccactacccatagtggcccccttttcttttctaatgatatgatatgattttctagtcactatatatttgcgctttgagagatgtgaggatttata |
316 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |
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|
| T |
2429297 |
gatcaccaccacccatagtggcccccttttctattctaatgatatgatatgattttctagtcactatatatttgtgctttgagagttgtggggatttata |
2429198 |
T |
|
| Q |
317 |
gggaaagatagagt-ggggagttgagagttgtggggacagcaaaagagcaaggattnnnnnnntagtttaggacaaacttttaagatgctagaaaacatt |
415 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
2429197 |
gggaaagatagagtgggggagttgagagttgtggggacagcaaaagagcaaggattaaaaaaatagtttaggacaaacttttaagatgctagaaaacatt |
2429098 |
T |
|
| Q |
416 |
ttgtttttaatgtatttagtggacaatggacacaagaataaacaaactaatgtaaaatttactgcaaatactacgtgggagtaaattactttatctccat |
515 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |
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|
| T |
2429097 |
ttgtttttactgtatttagtggacaatggacac---aataaacaaactaatgtaaaatttactgc-aatactatgt-ggagtaaattactttatctccat |
2429003 |
T |
|
| Q |
516 |
tcaaacataaagatattacaatttacaacccttcttttaaatgttacaaaacatacacaacc |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2429002 |
tcaaacataaagatattacaatttacaacccttctttt-aatgttacaaaacatacacaacc |
2428942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 2445894 - 2445700
Alignment:
| Q |
38 |
accaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaaccaa |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||| | |||||| | ||||| ||| |||||||||||||||||||| |||||| |||| |||||||| |
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|
| T |
2445894 |
accaatagagttcataattttgcttgtgattagcaacaccatagggatcattatgccatcaccaatagccccaaatgaaccaaaaaccattaaaaaccag |
2445795 |
T |
|
| Q |
138 |
tcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccactacccat |
232 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||| |
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|
| T |
2445794 |
tctagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttaacattaatagaaacatttttctgctcaccaccacccat |
2445700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 2679774 - 2679969
Alignment:
| Q |
37 |
taccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnnccaaaagccatgaaaaacca |
136 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| || ||||| ||| | ||||||||||| || || ||||||||||||||||| || |
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|
| T |
2679774 |
taccaatagagttcataattctgcttgtgataaacaaaaccaaaggagtcattagtccatcaccaatggcaccaatcaaaccaaaagccatgaaaaaaca |
2679873 |
T |
|
| Q |
137 |
atcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctgatcaccactacccat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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|
| T |
2679874 |
atcaagaacatcagcatgcatgaaaatggacctaaaagaaccatttttctttttcttaacattaatggaaacatttttctgatcaccaccacccat |
2679969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 2603032 - 2603245
Alignment:
| Q |
19 |
ttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnncc |
118 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||| | ||| || |||||||||| ||||| || |||||||||||||| | || || |
|
|
| T |
2603032 |
ttgatgtgccagaagcaccaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaaacc |
2603131 |
T |
|
| Q |
119 |
aaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttctga |
218 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2603132 |
aaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttaacattaatggaaacatttttctga |
2603231 |
T |
|
| Q |
219 |
tcaccactacccat |
232 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
2603232 |
tcaccaccacccat |
2603245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 2647308 - 2647526
Alignment:
| Q |
17 |
gcttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnn |
116 |
Q |
| |
|
||||||||| |||||| | |||||| ||||||||||| |||||||| ||||||||| | ||||| ||| || ||||||||||| || || |
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|
| T |
2647308 |
gcttgatgtgccagaaatagtaccaatagagttcataagtttgcttgagataaacaaaagcaaaggagtcattattccatcaccaatggctccaaacaaa |
2647407 |
T |
|
| Q |
117 |
ccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttcttt---ttcttatcattaatggaaacatttt |
213 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
2647408 |
ccaaaagccattaagaaacaatcaagaacatcagcatgcatgaaaatggacttaaaagaaccatttttctttttcttcttaacattaatggaaacatttt |
2647507 |
T |
|
| Q |
214 |
tctgatcaccactacccat |
232 |
Q |
| |
|
||||||||| || |||||| |
|
|
| T |
2647508 |
tctgatcactaccacccat |
2647526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 2615530 - 2615433
Alignment:
| Q |
117 |
ccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacattttt |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2615530 |
ccaaaaaccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttcaaagaaccattcttctttttcttatcattaatggaaacattttt |
2615433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 2575014 - 2575229
Alignment:
| Q |
17 |
gcttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaacacgaaagggaccatcatgccatcaccaatagccccnnnnnnn |
116 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| | ||| || |||||||||| ||||| || |||||||||||||| | || |
|
|
| T |
2575014 |
gcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaactgatatgccatcaccaatggaaccaatcaaa |
2575113 |
T |
|
| Q |
117 |
ccaaaagccatgaaaaaccaatcaagaacatcagcatgcatgaaaatggacttgaaagaaccatttttctttttcttatcattaatggaaacatttttct |
216 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| | | |||| |||||||||||| |
|
|
| T |
2575114 |
ccaaaaaccatgaaaaaccaatctagaacatctgcatgcatgaaaattgacttaaaagaaccatttttctttttcttcttaacaatgtaaacatttttct |
2575213 |
T |
|
| Q |
217 |
gatcaccactacccat |
232 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
2575214 |
gatcaccaccacccat |
2575229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 350 - 478
Target Start/End: Complemental strand, 2425810 - 2425687
Alignment:
| Q |
350 |
ggacagcaaaagagcaaggattnnnnnnntagtttaggacaaacttttaagatgctagaaaacattttgtttttaatgtatttagtggacaatggacaca |
449 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| |||||||||||| ||||||||||| |||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
2425810 |
ggacagcagaagagcaaggattaaaaaaatagtttagaacaaacttttaaaatgctagaaaatatttagtttttactttatttagtggacaatggacaca |
2425711 |
T |
|
| Q |
450 |
agaataaacaaactaatgtaaaatttact |
478 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
2425710 |
-----aaacaaactaatgtgaaatttact |
2425687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 748
Target Start/End: Complemental strand, 2428838 - 2428778
Alignment:
| Q |
687 |
ggtgtcatatcttccatcttttctctttctgtc-accatcgttgcgtttggatgttaatatta |
748 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
2428838 |
ggtgtcatatcttccatc-tttctctttctgtcaaccatcgttgcgttt-gatgttaatatta |
2428778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 2425910 - 2425823
Alignment:
| Q |
171 |
aaagaaccatttttctttttcttat---cattaatggaaacatttttctgatcaccactacccatagtgg-cccccttttcttttctaat |
256 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| |||| | || ||| |||| ||||||||||||||||||| |
|
|
| T |
2425910 |
aaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatcagccata--catggtggccccccttttcttttctaat |
2425823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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