View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5464-Insertion-3 (Length: 467)
Name: NF5464-Insertion-3
Description: NF5464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5464-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 19889661 - 19890108
Alignment:
| Q |
8 |
gttcaacgccaaagtatctagcggcagctagggtatcaagggcaagatcaacggctgaggtacaatgcgtatgccagcacgttctctcaccacaattagg |
107 |
Q |
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| T |
19889661 |
gttcaactccaaagtatctagcggcagctagagtatcaagggcaagatcaacggctgaggtacaatgcgtatgccagcaccctctctcaccacaattagg |
19889760 |
T |
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| Q |
108 |
tctaggctcatgtttctgaggaacaatagaaacttgtccactgtatagaaactgcaacaggaggaggaaaacctcgtagccgactgagttcactggaatg |
207 |
Q |
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| T |
19889761 |
tctaggctcatgtttctgaggaacaatagaaacttgtccactgtacagaaactgcaacaggaggaggaaaacctcgtagccgactgagttcactggaatg |
19889860 |
T |
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| Q |
208 |
acaccaggtcgtactgtcggctgacgagaggatcctcctcctattgggtctagtcccgaaggtgggtcgggcccacaaaagaatttcctgaagaaaagac |
307 |
Q |
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| T |
19889861 |
acaccaggtcgtactgtcggctgacgagaggatcctcctcctattgggtctagtcccgaaggtgggtcgggcccacaaaagaatttcctgaagaaaagac |
19889960 |
T |
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| Q |
308 |
tccttgctgctaagatgcagcgatgagcatgaaccaaacgaccttcaacttggaaagtgacgtcgctgaaggcttggccgttgatgaggagattcaggta |
407 |
Q |
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| T |
19889961 |
tccttgctgctaagatgcagcgatgagcatgaaccaaacgaccttcaacttggaaagtgacgtcgctgaaggcttggccgttgatgaggagattcaggta |
19890060 |
T |
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| Q |
408 |
gtcaagggagagagatcttagagtctcttcaaggggacatgttgttgtt |
456 |
Q |
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| T |
19890061 |
gtcaagggagagagatcttagagtctcttcaa-gggacatgttgttgtt |
19890108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 35317649 - 35317496
Alignment:
| Q |
8 |
gttcaacgccaaagtatctagcggcagctagggtatcaagggcaagatcaacggctgaggtacaatgcgtatgccagcacgttctctcaccacaattagg |
107 |
Q |
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| T |
35317649 |
gttcaactccaaagtatctagcggctgcaagagtatcaagagcaagatcaacggctgaagtacaatgtgtatgccaacaaccacggtcaccacaattagg |
35317550 |
T |
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| Q |
108 |
tctaggctcatgtttctgaggaacaatagaaacttgtccactgtatagaaactg |
161 |
Q |
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| T |
35317549 |
cctaggttcatgtttctgaggaacaatagaaacttgtccactgtacagaaactg |
35317496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 442
Target Start/End: Complemental strand, 35317405 - 35317215
Alignment:
| Q |
252 |
tgggtctagtcccgaaggtgggtcgggcccacaaaagaatttcctgaagaaaagactccttgctgctaagatgcagcgatgagcatgaaccaaacgacct |
351 |
Q |
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| T |
35317405 |
tgggtctaatccagaaggtgggtctggcccacaaaagaattttctgaagaatagacttcttgctgctaagatgcatctgtgtgcgtggactaaacgtcct |
35317306 |
T |
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| Q |
352 |
tcaacttggaaagtgacgtcgctgaaggcttggccgttgatgaggagattcaggtagtcaagggagagagatcttagagtctcttcaaggg |
442 |
Q |
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| T |
35317305 |
tcgacgctgaaaacaacgtcgctgaacgcttgtccgttgatgagaaggtttaagtagtctaaagaaagagatcttagtgagtcttcaaggg |
35317215 |
T |
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