View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5464_high_2 (Length: 463)
Name: NF5464_high_2
Description: NF5464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5464_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 45500879 - 45500425
Alignment:
| Q |
1 |
ccttgatttaaattggacttgtttgattgttagtttactgaatcatcaatatcaccttaatgaaatttgagtggctttgcagccaaatgcagttcttgac |
100 |
Q |
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| T |
45500879 |
ccttgatttaaattggacttgtttgattgttagtttactgaatcatcaatatcaccttaatgaaattt-agtggctttgcagccaaatgcagttcttgac |
45500781 |
T |
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| Q |
101 |
tagtggtggaggctcaaaggcatggaaaggagacgttgataaaaataggagagatggggtcaagttttactacgacggccaaggatttatgtctgttgag |
200 |
Q |
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| T |
45500780 |
tagtggtggaggctcaaaggcatggaaaggagacgttgataaaaataggagagatggggtcaagttttactatgacggacaaggatttatgtctgttgag |
45500681 |
T |
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| Q |
201 |
cttaagcaaatgaatgccaaagttgtctattacgatatttttggcaatgttttgcatgttctgaatctgtccaaggcgttacattatgcgatataagtaa |
300 |
Q |
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| T |
45500680 |
cttaagcaaatgaatgccaaagttgtctattacgatatttttggcaatgttttgcatgttctgaatctgtccaaggcgttacattatgcgatataagtat |
45500581 |
T |
|
| Q |
301 |
ggttgtcaaatccgcatctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatgaatgtatttatgtttt |
400 |
Q |
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| T |
45500580 |
ggttgtcaaatccgcatctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatgaatgtatttatgtttt |
45500481 |
T |
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| Q |
401 |
gaaaacttccggtccaaagaacgcttctgcgcttattgtctatatatgactctgtg |
456 |
Q |
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| T |
45500480 |
gaaaacttccggtccaaagaacgcttctgcgcttattgtctatatatgactctgtg |
45500425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 316 - 442
Target Start/End: Original strand, 27782353 - 27782479
Alignment:
| Q |
316 |
atctaaataaattggggaaaattgtgaaatctggcctttgtaataatgatatcaacaaccttaattatgaatgtatttatgttttgaaaacttccggtcc |
415 |
Q |
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|||||||||| ||||| ||||||||||||| |||||| ||| |||||||||||||| | ||||| ||||||||||||||| ||||||||||| ||| |
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| T |
27782353 |
atctaaataagctgggggaaattgtgaaatcaggccttattaagaatgatatcaacaagcctaattgtgaatgtatttatgtattgaaaacttctattcc |
27782452 |
T |
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| Q |
416 |
aaagaacgcttctgcgcttattgtcta |
442 |
Q |
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| T |
27782453 |
aaagaacgcttctgcgcttatagtcta |
27782479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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