View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5464_low_1 (Length: 575)
Name: NF5464_low_1
Description: NF5464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5464_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 21429583 - 21429022
Alignment:
| Q |
1 |
acattattaaataaacaaaacaaaacacctgaccattctcttgcccctt-gacttggtctcattctacactttaccatcactttctcttt--tctactac |
97 |
Q |
| |
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|||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| | || ||||| |
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| T |
21429583 |
acattattgaataaataaaa-aaaacacctgaccattctcttgcccctttgacttggtcacattctacactttaccatcactttctctctgttccactac |
21429485 |
T |
|
| Q |
98 |
agacataaaannnnnnnnnnnnnnntc----tcaaatcccacaacaataaccctgtcatgttgaatgatcaaagagcttcaacaagccatggaagagaac |
193 |
Q |
| |
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|||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21429484 |
agacataaaaacacaatatacacacacacactcaaatcccacaacaacaaccctgtcatgttgaatgatcaaagagcttcaacaagccatggcagagaac |
21429385 |
T |
|
| Q |
194 |
ataacgatgattatgatcaagaagatgaagaaattataagagaaattcatgccttaactccacctcaccctcaaacaagacaatcacaacacagtcacca |
293 |
Q |
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| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |
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| T |
21429384 |
agaatgatgattatgatcaagaagatgaagaaattataagagaaattcatgccttaaccccacctcactctcaaagaagacaatcacaacacagtcacca |
21429285 |
T |
|
| Q |
294 |
atcatctctattttccatagctagtgagaatttcacaagtataagtagagaattcagtgctttggttcaagcaggttcaagtattgaccataacaactta |
393 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21429284 |
atcatctctattttccatagctaatgagaatttcacaagtataagtagagaattcagtgctttggttcaagcaggttcaagtattgaccataacaactta |
21429185 |
T |
|
| Q |
394 |
agtccaatgatgactagtactactagtaatactaatagcaatgaaagagaaagcaacaataatagtagaagctttcacaacttgttgaggattagagaaa |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
21429184 |
agtccaatgatgactagtactactagtaatactaatagcaatgaaagagaaagcaacaataatattagaagctttcacaacttgttgaggattagagaaa |
21429085 |
T |
|
| Q |
494 |
atgaattgatggaagaaactaaccctttggcaattgtggctgataacaaccctttggagctgc |
556 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21429084 |
atgaattgatggaagaaactaaccctttggcaattgtggctgataacaaccctttggagctgc |
21429022 |
T |
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