View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5464_low_3 (Length: 340)
Name: NF5464_low_3
Description: NF5464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5464_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 44540092 - 44540416
Alignment:
| Q |
1 |
ccacattcattcttcttatttatttataaatctatcaattttctaaaaatagggtgaggatcttcctataaacnnnnnnnaggtacataatagaatttcc |
100 |
Q |
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| T |
44540092 |
ccacattcattcttcttatttatttataaatctatcaattttctaaaaatagggtgaggatcttcctataaactttttttaggtccataatagaatttcc |
44540191 |
T |
|
| Q |
101 |
attgaaagatacatattgttaaaggacaaatttttctttttccatccaaaacttcaatttagcattgcttcctcttgactcttataacttaaccggttcc |
200 |
Q |
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| T |
44540192 |
attgaaagatacatattgttaaaggacaaatttttctttttccatccaaaacttcaatttagcattgcttcctcttgactcttataacttaaccggttcc |
44540291 |
T |
|
| Q |
201 |
ccttttataaaaatcctttt-nnnnnnntaattgtgttttttcggtaaaaataaactaattattattatgtcatgcataggttctccattatttttgctt |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
44540292 |
ccttttataaaaatccttttaaaaaaaataattgtgttttttcggtaaaaataaacta---attattatgtcatgcataggt--tccattatttttgctt |
44540386 |
T |
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| Q |
300 |
aatgcatatgtaatgtaacggtttagaatt |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44540387 |
aatgcatatgtaatgtaacggtttagaatt |
44540416 |
T |
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