View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5464_low_4 (Length: 300)
Name: NF5464_low_4
Description: NF5464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5464_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 10118357 - 10118077
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttaaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10118357 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
10118258 |
T |
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| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10118257 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
10118158 |
T |
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| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10118157 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttc |
10118077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 27024805 - 27025085
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttaaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27024805 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
27024904 |
T |
|
| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27024905 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
27025004 |
T |
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| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27025005 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagaagcaagagattgtttgaaaatatatcttc |
27025085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 19256558 - 19256838
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttaaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19256558 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagtggggtccaaactgcacccacaagcagtg |
19256657 |
T |
|
| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19256658 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
19256757 |
T |
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| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19256758 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttc |
19256838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 33020578 - 33020858
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttaaagggaaagttgattatgagtttgatactgcagacacagcggggtccaaactgcacccacaagcagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33020578 |
attgttggagatggtagttgaggattcacttgaagggaaagttgattatgagtttgatactgcagacacagaggggtccaaactgcacccacaagcagtg |
33020677 |
T |
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| Q |
101 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33020678 |
gagatggtagttgaagatttagtggaagaggcagttgaagaaccacctcaagggcaaatagtgttggatattgatctaaatcttcttgctgatattggat |
33020777 |
T |
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| Q |
201 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagcagcaagagattgtttgaaaatatatcttc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33020778 |
ttgatttaaacaagtttgctgatgatgaaaatctaactcccaaagaagaagaagcaagagattgtttgaaaatatatcttc |
33020858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4890939 - 4890870
Alignment:
| Q |
1 |
attgttggagatggtagttgaggattcacttaaagggaaagttgattatgagtttgatactgcagacaca |
70 |
Q |
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||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||| || ||||||| |
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| T |
4890939 |
attgttggagatgatagttgaggatttactggaaggggaagttgattatgagtttgatattgtagacaca |
4890870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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