View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5465-Insertion-1 (Length: 839)

Name: NF5465-Insertion-1
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5465-Insertion-1
NF5465-Insertion-1
[»] chr8 (1 HSPs)
chr8 (8-839)||(20899641-20900492)


Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 839
Target Start/End: Original strand, 20899641 - 20900492
Alignment:
Q  8 ttctgttcattccctcttcactccttacgannnnnnnnaaggagaatgctgacttgattaaataatcaaaataggtgaaattgtatagaaaaataatgaa 107  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20899641 ttctgttcattccctcttcactccttacgattttttttaaggagaatgctgacttgattaaataatcaaaataggtgaaattgtatagaaaaataatgaa 20899740  T
Q  108 tttgttccattcataagaatttaatttgtacttctaagataagtttctctttatttattttttaattgatgtcttctggacacctattttgtgttaac-- 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||      
T  20899741 tttgttccattcataagaatttaatttgtacttctaagataagtttctctttatttattttttaattgatgtcttctggacatctattttgtgttaaccc 20899840  T
Q  206 -----------------gctctagtaatctggagctcgatcgcgagataagtaaaatttggttgagaattgttatcgtgaaaaattaaactcaaatactt 288  Q
                      |||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| ||||||||    
T  20899841 tctggttggggaacgagactctagtaatctggagttcgatcgcgaggtaagtaaagtttggttgagaattgttgtcctgaaaaattaaactgaaatactt 20899940  T
Q  289 ctaaacaa---gtcctt---tgagttt-aatgaacttgcaagt-aaaaaatgaaaatggaaaggaagac--aannnnnnngattggattattattctaat 378  Q
    ||||||||   ||||||   ||||||| ||||||||||||||| |||||||||||||||||||||||||  ||       ||||||||||||||||||||    
T  20899941 ctaaacaatttgtcctttgatgagtttaaatgaacttgcaagtaaaaaaatgaaaatggaaaggaagaccaaatttttttgattggattattattctaat 20900040  T
Q  379 cttaaaaatttcaccttgttcaacaaatttttaaccagaactttgcaatataata-atcagattgaacacgaacttaaacatgtttagataaactgtggt 477  Q
    |||  |||||||| ||||| | |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     |    
T  20900041 ctttgaaatttcatcttgtccgacaaatttttaacacgaactttgcaatataatatatcagattgaacacgaacttaaacatgtttagataaac-----t 20900135  T
Q  478 gtggattaagtcaacgaattgaacgggttacccagacccatcacccttaatgacgagaatcacacaacttaagtatagaaaaatgaaaattgtgttaaaa 577  Q
    ||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  20900136 gtggattaagtcaacgagttgaacgggttatccagacccatca-ccttagtgacgagaatcacacaacttaagtatagaaaaatgaaaattatgttcaaa 20900234  T
Q  578 attgcactaattcaacctgtaaacatccctactcgccactatgttaattggctcattacttttatattattttcccatttctctcttttcggctccgatg 677  Q
    |||||||||||||||  ||| ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  20900235 attgcactaattcaatatgttaa----tctactcgccactatgttaattggctcattacttttatattattttcccatttctctcttttcggctcatatg 20900330  T
Q  678 ttcacacttcctcgtttaccatgttgaga-cataggtgtctctaagttacacagctannnnnnngtttgatacaaaaatggctcttcacgctaaaaatat 776  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||       ||||||||| ||||||||||||||||| |||||  |    
T  20900331 ttcacacttcctcgtctaccacgttgagaccataggtgtctctaagtaacacagcta-ttttttgtttgatac-aaaatggctcttcacgccaaaaaatt 20900428  T
Q  777 gttaattggtattttgaatgtattgaaagct-aattcatccccatgataccaattttatacaat 839  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  20900429 gttaattggtattttgaatgtattgaaagctaaattcatccccacgataccaattttatacaat 20900492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University