View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5465-Insertion-2 (Length: 710)

Name: NF5465-Insertion-2
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5465-Insertion-2
NF5465-Insertion-2
[»] chr2 (3 HSPs)
chr2 (8-687)||(35123297-35123976)
chr2 (68-105)||(41875795-41875832)
chr2 (78-107)||(42852874-42852903)
[»] chr4 (5 HSPs)
chr4 (260-427)||(10185478-10185637)
chr4 (239-340)||(10185314-10185418)
chr4 (509-554)||(28930681-28930726)
chr4 (65-104)||(19039656-19039695)
chr4 (67-104)||(20936372-20936409)
[»] chr5 (3 HSPs)
chr5 (69-103)||(38034194-38034228)
chr5 (141-172)||(36927906-36927937)
chr5 (67-101)||(42573937-42573971)
[»] chr1 (4 HSPs)
chr1 (68-105)||(2194486-2194523)
chr1 (67-100)||(31517895-31517928)
chr1 (67-109)||(4920908-4920950)
chr1 (67-100)||(34619520-34619553)
[»] chr8 (2 HSPs)
chr8 (67-106)||(4389817-4389856)
chr8 (67-106)||(6526382-6526421)
[»] chr7 (3 HSPs)
chr7 (64-99)||(9038004-9038039)
chr7 (67-105)||(425979-426017)
chr7 (66-107)||(27508068-27508109)
[»] chr3 (1 HSPs)
chr3 (68-102)||(43079650-43079684)


Alignment Details
Target: chr2 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 8 - 687
Target Start/End: Complemental strand, 35123976 - 35123297
Alignment:
Q  8 atcatttcattactttcaccccctttatcaatttacttaagttgttattattatta------aattataagctgcaaattaagctatttatccaaacagg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||    
T  35123976 atcatttcattactttcaccccctttatcaatttacttaagttgttattattattattattaaattataagctgcaaattaagctatttatccaaacagg 35123877  T
Q  102 gccttagtggagaattgattttgacatgtttgcttactcttgaagctagaatttggagcttttgattcttaaattattgatttttacattcacttttaac 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35123876 gccttagtggagaattgattttgacatgtttgcttactcttgaagctagaatttggagcttttgattctaaaattattgatttttacattcacttttaac 35123777  T
Q  202 cactgtatgaattcactcaaaatcaatttttgttgtggcagaaccaaatacacagttaggttcttatagcacggttagtaaattgtctgatattgattta 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35123776 cactgtatgaattcactcaaaatcaatttttgttgtggcagaaccaaatacacagttagattcttatagcacggttagtaaattgtctgatattgattta 35123677  T
Q  302 gggatcaaatcaacttattaacccatgtaactttgaagatagagtattttaatttatttatgtaaaattttatgaagcacatacattctgattcttgggt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35123676 gggatcaaatcaacttattaacccatgtaactttgaagatagagtattttaatttatttatgtaaaattttatgaagcacatacattctgattcttgggt 35123577  T
Q  402 tttgttgtatcaagggacaatgttgttaactgcatatcgtacaaaatagtggcgtgttcaaaatatgctaccctagagggctatagcatcagagtaacca 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35123576 tttgttgtatcaagggacaatgttgttaactgcatatcgtacaaaatagtggcgtgttcaaaatatgctaccctagagggctatagcatcagagtaacca 35123477  T
Q  502 ctatttctcaactatatttaactagtaagcggttattctagacaatttggtaacattaaaaagaaccaaaacaacatcctacgggaaaactaaaccagta 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35123476 ctatttctcaactatatttaactagtaagcggttattctagacaatttggtaacattaaaaagaaccaaaacaacatcctac-ggaaaactaaaccagta 35123378  T
Q  602 aaaatatcaagttttggtgtaagaaagtattctatgatctcaaagttaatattctcacactaaggtgtgatccccgtggtacattt 687  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  35123377 aaaatatcaagttttggtgt-agaaagtattctatgatctc-aagtt-atattctcacact-aggtgtgat-cccgtggtacattt 35123297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 41875795 - 41875832
Alignment:
Q  68 ataagctgcaaattaagctatttatccaaacagggcct 105  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  41875795 ataagctgcaaattaagctattcatccaaacaaggcct 41875832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 42852874 - 42852903
Alignment:
Q  78 aattaagctatttatccaaacagggcctta 107  Q
    ||||||||||||||||||||||||||||||    
T  42852874 aattaagctatttatccaaacagggcctta 42852903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 260 - 427
Target Start/End: Original strand, 10185478 - 10185637
Alignment:
Q  260 ggttcttatagcacggttagtaaattgtctgatattgatttagggatcaaatcaacttattaacccatgtaactttgaagatagagtattttaatttatt 359  Q
    ||||||||||||| |||||| | ||||| | || ||| ||||   ||||||| ||| |||||||| ||||||||||||| |  ||||||||||||||||     
T  10185478 ggttcttatagcaaggttagcacattgtataatcttggtttaaaaatcaaatgaacatattaaccaatgtaactttgaaaa--gagtattttaatttatg 10185575  T
Q  360 tatgtaaaattttatgaagcacatacattctgattcttgggttttgttgtatcaagggacaatgttgt 427  Q
     |||||||||| ||||||||||||||      | |||||||||| |||||||| ||||||||||||||    
T  10185576 aatgtaaaattctatgaagcacatac------actcttgggtttagttgtatcgagggacaatgttgt 10185637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 10185314 - 10185418
Alignment:
Q  239 gcagaaccaaatacacagttaggttcttatagcacggttagtaaattgtctgatattgatttagggatcaaatcaac---ttattaacccatgtaacttt 335  Q
    |||||| |||||||||| |||||||||||||||  |||||||||||||| |||| ||| |||||  ||||||| |||   ||||||||||||||||||||    
T  10185314 gcagaatcaaatacacacttaggttcttatagctgggttagtaaattgtatgattttggtttagaaatcaaattaacgtattattaacccatgtaacttt 10185413  T
Q  336 gaaga 340  Q
    |||||    
T  10185414 gaaga 10185418  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 509 - 554
Target Start/End: Original strand, 28930681 - 28930726
Alignment:
Q  509 tcaactatatttaactagtaagcggttattctagacaatttggtaa 554  Q
    |||||||||||| |||||| ||| ||||||||||||||||||||||    
T  28930681 tcaactatattttactagttagcagttattctagacaatttggtaa 28930726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 19039695 - 19039656
Alignment:
Q  65 attataagctgcaaattaagctatttatccaaacagggcc 104  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  19039695 attataagctgcaaattaagttgtttatccaaacagggcc 19039656  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 20936372 - 20936409
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacagggcc 104  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  20936372 tataagctgcaaattaagctctttatccaaacatggcc 20936409  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 103
Target Start/End: Original strand, 38034194 - 38034228
Alignment:
Q  69 taagctgcaaattaagctatttatccaaacagggc 103  Q
    |||||||||||||||||||||||||||||||||||    
T  38034194 taagctgcaaattaagctatttatccaaacagggc 38034228  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 172
Target Start/End: Original strand, 36927906 - 36927937
Alignment:
Q  141 ttgaagctagaatttggagcttttgattctta 172  Q
    ||||||||||||||||||||||||||||||||    
T  36927906 ttgaagctagaatttggagcttttgattctta 36927937  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 42573937 - 42573971
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacagg 101  Q
    |||||||||||||||||||| ||||||||||||||    
T  42573937 tataagctgcaaattaagctgtttatccaaacagg 42573971  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 2194486 - 2194523
Alignment:
Q  68 ataagctgcaaattaagctatttatccaaacagggcct 105  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  2194486 ataagctgcaaattaagctgtttatccaaacagggcct 2194523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 31517895 - 31517928
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacag 100  Q
    ||||||||||||||||||||||||||||||||||    
T  31517895 tataagctgcaaattaagctatttatccaaacag 31517928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 4920908 - 4920950
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacagggccttagt 109  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  4920908 tataagctgcaaattaagctgtttatccaaacatggctttagt 4920950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 34619520 - 34619553
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacag 100  Q
    |||||||||||||||||||| |||||||||||||    
T  34619520 tataagctgcaaattaagctgtttatccaaacag 34619553  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 4389856 - 4389817
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacagggcctt 106  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  4389856 tataagctgcaaaataagttatttatccaaacagggcctt 4389817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 6526382 - 6526421
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacagggcctt 106  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  6526382 tataagctgcaaattaagctgtttatccaaacaaggcctt 6526421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 99
Target Start/End: Complemental strand, 9038039 - 9038004
Alignment:
Q  64 aattataagctgcaaattaagctatttatccaaaca 99  Q
    |||||||||||||||||||| |||||||||||||||    
T  9038039 aattataagctgcaaattaaactatttatccaaaca 9038004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 425979 - 426017
Alignment:
Q  67 tataagctgcaaattaagctatttatccaaacagggcct 105  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  425979 tataagctgcaaaataagttatttatccaaacagggcct 426017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 27508109 - 27508068
Alignment:
Q  66 ttataagctgcaaattaagctatttatccaaacagggcctta 107  Q
    ||||||||||||||||||||| |||||| ||| |||||||||    
T  27508109 ttataagctgcaaattaagctgtttatcaaaatagggcctta 27508068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 43079684 - 43079650
Alignment:
Q  68 ataagctgcaaattaagctatttatccaaacaggg 102  Q
    ||||||||||||||||||| |||||||||||||||    
T  43079684 ataagctgcaaattaagctgtttatccaaacaggg 43079650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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