View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5465-Insertion-3 (Length: 603)
Name: NF5465-Insertion-3
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 225 - 603
Target Start/End: Complemental strand, 2645939 - 2645565
Alignment:
| Q |
225 |
cctgtgatgaattctttttgagaagactagcaagtaaattccgattctcagcatcttgccataacctagcacatttttcattatgatcgaatccgttagt |
324 |
Q |
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| T |
2645939 |
cctgtgatgagttctttttgagaagactagcaagtaaattccgattctcagcatcttgccataacctagcacatttttcattataatcgaatccgttagt |
2645840 |
T |
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| Q |
325 |
gtttcagattnnnnnnnnnttgaaaacaaatagcagaaattaagatgaatcgaattgaaatgaatgagaatcggatcggaatacggaacctgccggcgac |
424 |
Q |
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| T |
2645839 |
gtttcagat-gaaaaaaaattgaaaacaaatagcagaaattaagatgaatcgaattgaaatgaatgagaatcggatcggaatacggaacctgccggcgac |
2645741 |
T |
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| Q |
425 |
gtaaagccaagcgacgcaagagaagaaagctaagaggagggaaggtttcgatgtttgaacgatttttgatcttcctcctcctcctccacctcgcttcgac |
524 |
Q |
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| T |
2645740 |
gtaaagccaagcgacgcaagagaagaaagctaagaggagggaaggttttgatgtttgaacgatttttgatcttcctcctc---ctccacctcgcttcgac |
2645644 |
T |
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| Q |
525 |
gacgatgttgttggtaatgtatccatcgctgagattgatcagttcacgactccaattgatatttatgcaaatcctcaac |
603 |
Q |
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| T |
2645643 |
gacgatgttgttggtaatgtatccatcgctgagattgatcagttcacgattccaattgatatttatgcaaatcctcaac |
2645565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 2646143 - 2645992
Alignment:
| Q |
12 |
aaatcataaatactctactgtaaatnnnnnnntcagcatctaaattattgcttgtgtcgacatgttgttgtgtccgtgcttcatatccgaaaaggcgaaa |
111 |
Q |
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| T |
2646143 |
aaatcataaatactctactgtaaataaaaaaatcagcatctaaattattgcttgtgtcgacatgttgttgtgtccgtgcttcatatccgaaaaggcgaaa |
2646044 |
T |
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| Q |
112 |
acaatatggatttcaaaattcaatcataaatcataaaaatcagcaactaaactgatatc |
170 |
Q |
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| T |
2646043 |
acaatatggatttcaaaattcaatca-------taaaaatcagcaactaaactgatatc |
2645992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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