View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5465-Insertion-5 (Length: 512)
Name: NF5465-Insertion-5
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465-Insertion-5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 41417733 - 41417378
Alignment:
| Q |
8 |
tgagggtgggttgtttcttttctgttgaaaaatggtggccgttgatctttggttgtacgttggttagtgaagtgatggtggaatggtttaattattttgt |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
41417733 |
tgagggtggattgtttcttttctgttgaaaaatggtgcccgttgatctttggttgtacgttggttagtgaagtgatgttggaatggttaaattattttgt |
41417634 |
T |
|
| Q |
108 |
acatgcttggcctagcaggttcttagtcagcaggtccaccactcaatcaatgttataatttcggctctgcttcgttgtatgattgattcaacttctttgt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41417633 |
acatgcttggcctagcaggttcttagtcagcaggtccaccactcaatcaatgttataatttcgcctctgcttcgttgtatgattgattcaacttctttgt |
41417534 |
T |
|
| Q |
208 |
tttttctcccttcaaaacaaaaaagataaactttacttcnnnnnnnnncttgcaacttctcttggaattgattaaaatgattgtccnnnnnnnnngtttg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41417533 |
tttttctcccttcaaaacaaaaaagataaactttactt----ttttttcttgcaacttctcttggaattgattaaaatgattgtcc-ttttttttgtttg |
41417439 |
T |
|
| Q |
308 |
atttaactcttactaataatagcggaaatgaaac-ttgtagaaggataaaaagagctaatt |
367 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41417438 |
atttaactctttctaataatagtggaaatgaaactttgtagaaggataaaaagagctaatt |
41417378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 362 - 490
Target Start/End: Complemental strand, 41417238 - 41417117
Alignment:
| Q |
362 |
ctaattaatgatgctatagtacgacattttgggaagagtaaaatatagaccttttttgtacaagaaaagtaatgtaggagaatgaatgtggagttgttag |
461 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41417238 |
ctaattaatgatgttatagtacgacattttgg-aagagtaaaatattgaccttttttgtacat------taatgtaggagaatgaatgtggagttgttag |
41417146 |
T |
|
| Q |
462 |
agaatggagtataatcccctaggcatctc |
490 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41417145 |
agaatggagtataatcccctaggcatctc |
41417117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University