View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5465-Insertion-6 (Length: 410)
Name: NF5465-Insertion-6
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465-Insertion-6 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 10083161 - 10083362
Alignment:
| Q |
17 |
gaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcgaatgctctatacacttttttgcaagcacccgatcctagtaactcg |
116 |
Q |
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| T |
10083161 |
gaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctataaacttttttgcaagcacccgatcctagtaactcg |
10083260 |
T |
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| Q |
117 |
tcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctagcaccaacata |
216 |
Q |
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| T |
10083261 |
tcatatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctagcaccaacata |
10083360 |
T |
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| Q |
217 |
tg |
218 |
Q |
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|| |
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| T |
10083361 |
tg |
10083362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 10083428 - 10083554
Alignment:
| Q |
284 |
tctagacacttgtgatttttagagaataaaatcaattaaaaatgtttgacaatttatgtcgtgatgtcgaggtttttgatgtctctacaatcattgtgat |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10083428 |
tctagacacttgtgatttttagagaataaaatcaattaaaaatgtttgacaatttatgtcgtgatgtcaaggtttttgatgtctctacaatcattgtgat |
10083527 |
T |
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| Q |
384 |
ttcgattaagtgttgtttaacgccgat |
410 |
Q |
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| T |
10083528 |
ttcgattaagtgttgtttaacgccgat |
10083554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 22263969 - 22264148
Alignment:
| Q |
27 |
agcttaacttgattccaagctacttctattccttcttcttgatcgaatgctctatacacttttttgcaagcacccgatcctagtaactcgtcgtatcttc |
126 |
Q |
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| T |
22263969 |
agcttaacttgattccatgctacttctattccttcttcattatcaaatgctttatagacttttttacaagcaccagctccaagtaattcatcgtatcttc |
22264068 |
T |
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| Q |
127 |
catatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctag |
206 |
Q |
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| T |
22264069 |
catatcttccagttggatcagtttcaacaaatgtttctgtgtctttgtcggatggattttgttgaacacttggcatctag |
22264148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 22269871 - 22269692
Alignment:
| Q |
27 |
agcttaacttgattccaagctacttctattccttcttcttgatcgaatgctctatacacttttttgcaagcacccgatcctagtaactcgtcgtatcttc |
126 |
Q |
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| T |
22269871 |
agcttaacttgattccatgctacttctattccttcttcattatcaaatgctttatagacttttttacaagcaccagctccaagtaattcatcgtatcttc |
22269772 |
T |
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| Q |
127 |
catatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctag |
206 |
Q |
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| T |
22269771 |
catatcttccagttggatcagtttcaacaaatgtttctgtgtctttgtcggatggattttgttgaacacttggcatctag |
22269692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 45874547 - 45874720
Alignment:
| Q |
33 |
acttgattccaagctacttctattccttcttcttgatcgaatgctctatacacttttttgcaagcacccgatcctagtaactcgtcgtatcttccatatc |
132 |
Q |
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| T |
45874547 |
acttgattccacgcaacttctattccttcttcttgatcaaatgctttgtacacttttttacaagaacctgatccaagtaattcattgtatctaccatatc |
45874646 |
T |
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| Q |
133 |
ttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctag |
206 |
Q |
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| T |
45874647 |
ttccagttgggtcagtttcaacaaatggttctgagtctttgtcgaatggatttggtttaacacttttcatctag |
45874720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 19034 - 18981
Alignment:
| Q |
17 |
gaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatc |
70 |
Q |
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| T |
19034 |
gaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatc |
18981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 41245936 - 41245997
Alignment:
| Q |
27 |
agcttaacttgattccaagctacttctattccttcttcttgatcgaatgctctatacacttt |
88 |
Q |
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| T |
41245936 |
agcttcacttggttccatgctacctctattccttcttcttgatcgaatgcacgatacacttt |
41245997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 42725060 - 42725007
Alignment:
| Q |
17 |
gaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatc |
70 |
Q |
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|||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |
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| T |
42725060 |
gaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatc |
42725007 |
T |
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