View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5465-Insertion-7 (Length: 350)

Name: NF5465-Insertion-7
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5465-Insertion-7
NF5465-Insertion-7
[»] chr3 (3 HSPs)
chr3 (104-293)||(32522909-32523098)
chr3 (14-47)||(32522823-32522856)
chr3 (310-350)||(32523113-32523153)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 104 - 293
Target Start/End: Original strand, 32522909 - 32523098
Alignment:
Q  104 ataaatgctatgcatacttaatttcatgaaattctgtgattttcaatattaattttctaatttatcgattctttaagcatgttatgagttagttcgcaga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32522909 ataaatgctatgcatacttaatttcatgaaattctgtgattttctatattaattttctaatttatcgattctttaagcatgttatgagttagttcgcaga 32523008  T
Q  204 ttctattgtttttgtttttctgcgatgttgaatttgtgtttgtatctgatgtactctagcaatttgaaccaatgatgttgtgtttcttag 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  32523009 ttctattgtttttgtttttctgcgatgttgaatttgtgtttgtatctgatgtactctagcaatttgaacgaatgatgtcgtgtttcttag 32523098  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 32522823 - 32522856
Alignment:
Q  14 ttcaatgtcaccgttatcatcgttaacaagtgga 47  Q
    ||||||||||||||||||||||||||||||||||    
T  32522823 ttcaatgtcaccgttatcatcgttaacaagtgga 32522856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 32523113 - 32523153
Alignment:
Q  310 atcatgcctttgagtcactatttgggcggagagggagggac 350  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  32523113 atcatgcctttgagtcactagttgggcagagggggagggac 32523153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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