View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5465_high_1 (Length: 487)
Name: NF5465_high_1
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 41417729 - 41418186
Alignment:
| Q |
19 |
cctcaataattaaaaaaggacacaagcaaggaaatta-cattcacataaaa-agaaagaaagaaatcatcgaggaattcaataatacacaatttcaaatt |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41417729 |
cctcaataattaaaaaaggacacaagaaaggaaattaacattcacataaaataaaaagaaagaaatcatcgaggaattcaataatacagaatttcaaatt |
41417828 |
T |
|
| Q |
117 |
tcatttcccatctagtagtcagtagttgggagctgctcgtgggtgctgttgatgaagagaacctcatagacaagtccagcaattccaccaccgataagtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41417829 |
tcatttcccatctagtagtcagtagttgggagctgctcgtgggtgctgttgatgaagagaacctcatagacaagtccagcaattccaccaccgataagtg |
41417928 |
T |
|
| Q |
217 |
ggccagcccagtagacccagtggttggaccagctccagctcacaacagcaggcccgaatgacactgctgggttcatggatgctccggtgaaggctccacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41417929 |
ggccagcccagtagacccagtggttggaccagctccagctcacaacagcaggcccgaatgacactgctgggttcatggatgctccggtgaaggctccacc |
41418028 |
T |
|
| Q |
317 |
aaccaaaatgttagcaccaacgatgaaaccaatagcaattggtgcaataattccaatgttacccttctttgggtcaacggctgtagcatacactgtgtac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41418029 |
aaccaaaatgttagcaccaacgatgaaaccaatagcaattggtgcaataattccaatgttacccttctttgggtcaacggctgtagcatacactgtgtac |
41418128 |
T |
|
| Q |
417 |
accaatccaaaggtcatcacaatctccaacaccaaagctggtccaactccaactccct |
474 |
Q |
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| T |
41418129 |
accaatccaaaggtcatcacaatctccaacaccaaagctggtccaactccaactccct |
41418186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 439
Target Start/End: Complemental strand, 7656855 - 7656674
Alignment:
| Q |
258 |
acaacagcaggcccgaatgacactgctgggttcatggatgctccggtgaaggctccaccaaccaaaatgttagcaccaacgatgaaaccaatagcaattg |
357 |
Q |
| |
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|||||||||||||| |||||||| ||||| ||||||||||| || || ||||||||| | || || || |||||||| || | |||||| ||||||| |
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| T |
7656855 |
acaacagcaggcccaaatgacacagctggattcatggatgcaccatcaaatgctccaccagctaagatatttgcaccaacaataacaccaattgcaattg |
7656756 |
T |
|
| Q |
358 |
gtgcaataattccaatgttacccttctttgggtcaacggctgtagcatacactgtgtacaccaatccaaaggtcatcacaat |
439 |
Q |
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| T |
7656755 |
gagcaataattcctatattccctttttttggatctactgctgttgcataaactgtgtataccaatccaaatgtcatcacaat |
7656674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 448
Target Start/End: Complemental strand, 23340471 - 23340273
Alignment:
| Q |
250 |
tccagctcacaacagcaggcccgaatgacactgctgggttcatggatgctccggtgaaggctccaccaaccaaaatgttagcaccaacgatgaaaccaat |
349 |
Q |
| |
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||||||| |||||||||||||| || || |||||||||||||||||||| || || || ||||| | || |||||||| ||||| ||||||||||| |
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| T |
23340471 |
tccagctaacaacagcaggcccaaaagaaactgctgggttcatggatgcaccatcaaatgcaccacctgctaagatgttagctccaactatgaaaccaat |
23340372 |
T |
|
| Q |
350 |
agcaattggtgcaataattccaatgttacccttctttgggtcaacggctgtagcatacactgtgtacaccaatccaaaggtcatcacaatctccaacac |
448 |
Q |
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|||||||| ||||| |||| | | |||| || |||||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |
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| T |
23340371 |
tgcaattggagcaattgttcctaggctaccattttttgggtctactgcagtagcatacactgtgtaaaccaaaccaaaagtcatcacaatctcaaacac |
23340273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 52102271 - 52102311
Alignment:
| Q |
258 |
acaacagcaggcccgaatgacactgctgggttcatggatgc |
298 |
Q |
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||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
52102271 |
acaacagcaggcccgaaagacacagctgggttcattgatgc |
52102311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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