View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5465_high_2 (Length: 425)

Name: NF5465_high_2
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5465_high_2
NF5465_high_2
[»] chr1 (4 HSPs)
chr1 (16-206)||(2646142-2646332)
chr1 (268-411)||(2646394-2646537)
chr1 (117-147)||(13759928-13759958)
chr1 (116-162)||(39828252-39828298)
[»] chr8 (3 HSPs)
chr8 (111-151)||(14227214-14227254)
chr8 (111-150)||(2648275-2648314)
chr8 (106-149)||(10170408-10170451)
[»] chr4 (3 HSPs)
chr4 (100-156)||(5110467-5110523)
chr4 (118-150)||(12084213-12084245)
chr4 (111-151)||(44796989-44797029)
[»] chr2 (2 HSPs)
chr2 (111-151)||(14268760-14268800)
chr2 (111-151)||(44605166-44605206)
[»] chr5 (3 HSPs)
chr5 (117-151)||(4206318-4206352)
chr5 (117-151)||(42626766-42626800)
chr5 (119-156)||(28296315-28296352)
[»] scaffold0024 (1 HSPs)
scaffold0024 (117-150)||(151433-151466)
[»] chr6 (1 HSPs)
chr6 (111-151)||(13851728-13851768)
[»] chr3 (1 HSPs)
chr3 (119-151)||(10504938-10504970)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 2646142 - 2646332
Alignment:
Q  16 ttatgatctctattgcactaacacttttgatcgaaggcatgttcggtgttggacatgtataagtactgtccaacaccgaaacgaaattaaattcgattaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2646142 ttatgatctctattgcactaacacttttgatcgaaggcatgttcggtgttggacatgtataagtactgtccaacaccgaaacgaaattaaatttgattaa 2646241  T
Q  116 gttattttctcaaattattatcggtgttgacgtgtccatgtatgtgttagtgctttatatagtttacgactgaattttgaaattcatgttg 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2646242 gttattttctcaaattattatcggtgttgacgtgtctatgtatgtgttagtgctttatatagtttacgactgaattttgaaactcatgttg 2646332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 268 - 411
Target Start/End: Original strand, 2646394 - 2646537
Alignment:
Q  268 gttgctagaggcctaaggttcttacggtggaagataagttaatggtactagggtgcaggtaattgtgctctttttgtgttaacttattttatatannnnn 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  2646394 gttgctagaggcctaaggttcttacggtggaagataagttaatggtactagggtgcaggtaattgtgctctttttgtgttaacttattttatatattttt 2646493  T
Q  368 nnagattcggttgatttgttgtttttggtgatatttagtttgat 411  Q
      ||||||||||||||||| ||||||||||||||||||||||||    
T  2646494 ttagattcggttgatttgtcgtttttggtgatatttagtttgat 2646537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 147
Target Start/End: Original strand, 13759928 - 13759958
Alignment:
Q  117 ttattttctcaaattattatcggtgttgacg 147  Q
    |||||||||||||||||||||||||||||||    
T  13759928 ttattttctcaaattattatcggtgttgacg 13759958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 39828298 - 39828252
Alignment:
Q  116 gttattttctcaaattattatcggtgttgacgtgtccatgtatgtgt 162  Q
    ||||||||||||||||||||| ||||| ||||||||| ||| |||||    
T  39828298 gttattttctcaaattattattggtgtcgacgtgtccgtgtttgtgt 39828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 14227254 - 14227214
Alignment:
Q  111 attaagttattttctcaaattattatcggtgttgacgtgtc 151  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  14227254 attatgttattttctcaaattattattggtgttgacgtgtc 14227214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 2648275 - 2648314
Alignment:
Q  111 attaagttattttctcaaattattatcggtgttgacgtgt 150  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  2648275 attatgttattttctcaaattattattggtgttgacgtgt 2648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 10170408 - 10170451
Alignment:
Q  106 attcgattaagttattttctcaaattattatcggtgttgacgtg 149  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||    
T  10170408 attcaattaatttattttctcaaattattattggtgttgacgtg 10170451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 5110467 - 5110523
Alignment:
Q  100 aattaaattcgattaagttattttctcaaattattatcggtgttgacgtgtccatgt 156  Q
    ||||| |||| ||||||||||||| |||||| || |||||| |||||||||||||||    
T  5110467 aattacattcaattaagttattttttcaaataatcatcggttttgacgtgtccatgt 5110523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 12084245 - 12084213
Alignment:
Q  118 tattttctcaaattattatcggtgttgacgtgt 150  Q
    ||||||||||||||||||||||||||| |||||    
T  12084245 tattttctcaaattattatcggtgttggcgtgt 12084213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 44796989 - 44797029
Alignment:
Q  111 attaagttattttctcaaattattatcggtgttgacgtgtc 151  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  44796989 attatgttattttctcaaattattgtcggtgttgacatgtc 44797029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 14268760 - 14268800
Alignment:
Q  111 attaagttattttctcaaattattatcggtgttgacgtgtc 151  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  14268760 attaagtcattttctcaaattattaccggtgttgacgtgtc 14268800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 44605166 - 44605206
Alignment:
Q  111 attaagttattttctcaaattattatcggtgttgacgtgtc 151  Q
    |||| ||||||||||||||||||||| || |||||||||||    
T  44605166 attatgttattttctcaaattattattggcgttgacgtgtc 44605206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 4206352 - 4206318
Alignment:
Q  117 ttattttctcaaattattatcggtgttgacgtgtc 151  Q
    ||||||||||||||||||| |||||||||||||||    
T  4206352 ttattttctcaaattattaacggtgttgacgtgtc 4206318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 42626800 - 42626766
Alignment:
Q  117 ttattttctcaaattattatcggtgttgacgtgtc 151  Q
    |||||||||||||||||||||||| ||||||||||    
T  42626800 ttattttctcaaattattatcggtattgacgtgtc 42626766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 28296352 - 28296315
Alignment:
Q  119 attttctcaaattattatcggtgttgacgtgtccatgt 156  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  28296352 attttctcaaattattatcggtgtcgacttgtccatgt 28296315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 151433 - 151466
Alignment:
Q  117 ttattttctcaaattattatcggtgttgacgtgt 150  Q
    |||||||||||||||||||||||||||| |||||    
T  151433 ttattttctcaaattattatcggtgttgtcgtgt 151466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 13851768 - 13851728
Alignment:
Q  111 attaagttattttctcaaattattatcggtgttgacgtgtc 151  Q
    |||| |||||||||||||||||||| |||||| ||||||||    
T  13851768 attacgttattttctcaaattattagcggtgtcgacgtgtc 13851728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 10504938 - 10504970
Alignment:
Q  119 attttctcaaattattatcggtgttgacgtgtc 151  Q
    ||||| |||||||||||||||||||||||||||    
T  10504938 attttttcaaattattatcggtgttgacgtgtc 10504970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University