View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5465_high_4 (Length: 414)

Name: NF5465_high_4
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5465_high_4
NF5465_high_4
[»] chr3 (17 HSPs)
chr3 (19-399)||(4272065-4272446)
chr3 (54-157)||(25713426-25713529)
chr3 (52-159)||(24574904-24575011)
chr3 (63-160)||(33119622-33119719)
chr3 (83-159)||(6784086-6784162)
chr3 (65-144)||(24150832-24150911)
chr3 (63-144)||(19552148-19552229)
chr3 (63-144)||(26555817-26555898)
chr3 (63-144)||(35730935-35731016)
chr3 (63-144)||(36055007-36055088)
chr3 (63-144)||(38682429-38682510)
chr3 (87-143)||(34292505-34292561)
chr3 (51-135)||(45215410-45215494)
chr3 (63-147)||(50900444-50900528)
chr3 (63-104)||(43151162-43151203)
chr3 (71-103)||(28146300-28146332)
chr3 (83-147)||(30588862-30588926)
[»] chr7 (10 HSPs)
chr7 (53-159)||(31494232-31494338)
chr7 (63-159)||(47031248-47031344)
chr7 (58-153)||(24939640-24939735)
chr7 (84-159)||(36355468-36355543)
chr7 (76-160)||(32630714-32630798)
chr7 (64-160)||(48545802-48545899)
chr7 (71-138)||(32630649-32630716)
chr7 (63-144)||(151861-151942)
chr7 (63-144)||(27418642-27418723)
chr7 (64-144)||(30110807-30110887)
[»] chr2 (10 HSPs)
chr2 (63-159)||(27090638-27090734)
chr2 (54-160)||(2372963-2373069)
chr2 (51-160)||(30046113-30046222)
chr2 (51-160)||(30137157-30137266)
chr2 (54-160)||(24936122-24936228)
chr2 (54-160)||(25684806-25684912)
chr2 (71-135)||(2485652-2485716)
chr2 (54-137)||(18176476-18176559)
chr2 (56-144)||(29940941-29941029)
chr2 (63-159)||(38822919-38823016)
[»] chr5 (4 HSPs)
chr5 (56-160)||(7857021-7857125)
chr5 (86-143)||(9689337-9689394)
chr5 (63-103)||(6902692-6902732)
chr5 (63-144)||(40410593-40410674)
[»] chr1 (6 HSPs)
chr1 (54-159)||(9191125-9191230)
chr1 (63-137)||(51826843-51826917)
chr1 (63-144)||(26882826-26882907)
chr1 (54-135)||(27198265-27198346)
chr1 (63-144)||(45318463-45318544)
chr1 (56-144)||(52705389-52705477)
[»] chr8 (9 HSPs)
chr8 (76-156)||(14723940-14724020)
chr8 (56-157)||(24296639-24296740)
chr8 (55-144)||(2112786-2112875)
chr8 (63-144)||(42274975-42275056)
chr8 (71-157)||(38806866-38806952)
chr8 (63-144)||(1606013-1606094)
chr8 (63-144)||(29260276-29260357)
chr8 (64-144)||(43605364-43605444)
chr8 (88-160)||(23185725-23185797)
[»] chr6 (1 HSPs)
chr6 (54-160)||(35164798-35164904)
[»] chr4 (3 HSPs)
chr4 (76-159)||(5116977-5117060)
chr4 (63-144)||(8584005-8584086)
chr4 (63-135)||(28847111-28847183)
[»] scaffold0016 (1 HSPs)
scaffold0016 (63-144)||(81782-81863)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 4272065 - 4272446
Alignment:
Q  19 ctctttccaatctggaa-gcagcagaagcaaaagacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaat 117  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4272065 ctctttccaatctggaaagcagtagaagcaaaagacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaat 4272164  T
Q  118 cttgaagtattcaatcaagatctttaaagattagaaataatttatgcggtcttactcttcacaagggtgattccccttggactactttggccctgaagtc 217  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4272165 cttgaagtattcaatcaagatttttaaagattagaaataattcatgcggtcttactcttcgcaagggtgattccccttggactactttggccctgaagtc 4272264  T
Q  218 gaatcttcgcaaattgtgaccaaatcctcagaactgggatgtcacgcctctagggaagggttttttcgagttccattttaacacagttgatgatatgaga 317  Q
     ||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4272265 aaatctccgcaaattgtggccaaatcttcagaactgggatgtcacacctctagggaagggttttttcgagttccattttaacacggttgatgatatgaga 4272364  T
Q  318 cgggtgtaggctatgggggttgtgcatctcaaccccggcttacttagattcttttgctggtcttgtgatttcactccacagg 399  Q
     |||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4272365 tgggtttgggctatgggggctgtgcatctcaaccccgacttacttagattcttttgctggtcttgtgatttcactccacagg 4272446  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 25713529 - 25713426
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 153  Q
    |||||||| ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| |||||| |||||||| || |||||||||||    
T  25713529 ttaggagggtgtattgaattgggatttcgaaggattttaaaagagtttttagttatagaaaaatcttgaggtattccatcaagattttaaaagattagaa 25713430  T
Q  154 ataa 157  Q
    ||||    
T  25713429 ataa 25713426  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 24575011 - 24574904
Alignment:
Q  52 acttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattag 151  Q
    ||||||| || || |||| |||||||||| |||| ||||||||||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||    
T  24575011 acttagggggatgaattgaattgggattttgaagaattttaaaagactttttagttataaaaaaatcttgagatattcaatcaagattttaaaagattag 24574912  T
Q  152 aaataatt 159  Q
    ||||||||    
T  24574911 aaataatt 24574904  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 33119719 - 33119622
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 160  Q
    ||||||| |||||||| | ||||||||||||||||| |||| || ||| |||||| | || ||||||||||||||| || ||||||||||||||||||    
T  33119719 tgtattgaattgggatattgaaggattttaaaagatattttagttataaaaaaatttcgaggtattcaatcaagattttaaaagattagaaataattt 33119622  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 6784162 - 6784086
Alignment:
Q  83 aaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 159  Q
    |||||||||| |||| ||||| || ||| |||||||||||  |||||||||||||| || |||||||||||||||||    
T  6784162 aaggattttataagactttttagttatacaaaaatcttgagatattcaatcaagattttaaaagattagaaataatt 6784086  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 24150911 - 24150832
Alignment:
Q  65 tattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||| |||||  ||||||||||||||||||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  24150911 tattggattgagatttcaaaggattttaaaagatttttttgttttataaaaatcttgtggtattcaatcaagatttttaa 24150832  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 19552229 - 19552148
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  |||||||||||||||||||||  |  || |||| |||||  ||||||||||||||| |||||    
T  19552229 tgtattggattgagattttaaaggattttaaaagatttttttattttataaaagtcttgtggtattcaatcaagatttttaa 19552148  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 26555817 - 26555898
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  26555817 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 26555898  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 35730935 - 35731016
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||   |||||||||||||| |||||    
T  35730935 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 35731016  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 36055088 - 36055007
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  36055088 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 36055007  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 38682429 - 38682510
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    ||||||| |||| |||||  ||||||||||||||| ||||| ||  || ||||||||||  ||||||||||||||| |||||    
T  38682429 tgtattgtattgagatttcaaaggattttaaaagacttttttgttttaaaaaaatcttgtggtattcaatcaagatttttaa 38682510  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 34292561 - 34292505
Alignment:
Q  87 attttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 143  Q
    |||||||||||||||||   |||| |||||||||| |||||||||||||||| ||||    
T  34292561 attttaaaagattttttaaaaataaaaaaatcttgtagtattcaatcaagattttta 34292505  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 45215494 - 45215410
Alignment:
Q  51 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 135  Q
    ||||||||||| ||||||  |||  |||||| | ||||||||||||| |||||  ||||| ||||||||||  ||||||||||||    
T  45215494 gacttaggagggtgtattaaattaagatttgaagggattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaa 45215410  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 50900528 - 50900444
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaaga 147  Q
    |||||||||||  |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| ||||||||    
T  50900528 tgtattggattaagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 50900444  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 43151162 - 43151203
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttg 104  Q
    ||||||| |||||||||| |||||||||||||||| ||||||    
T  43151162 tgtattgaattgggattttgaaggattttaaaagactttttg 43151203  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28146332 - 28146300
Alignment:
Q  71 attgggatttggaaggattttaaaagatttttt 103  Q
    ||||||||||||||||||||||||||| |||||    
T  28146332 attgggatttggaaggattttaaaagacttttt 28146300  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 30588862 - 30588926
Alignment:
Q  83 aaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaaga 147  Q
    ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| ||||||||    
T  30588862 aaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaaaga 30588926  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 31494232 - 31494338
Alignment:
Q  53 cttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattaga 152  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || ||||||||||    
T  31494232 cttaggagggtgtattggattgggatttggaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattaga 31494331  T
Q  153 aataatt 159  Q
    |||||||    
T  31494332 aataatt 31494338  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 47031248 - 47031344
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 159  Q
    ||||||| |||||||||| |||||||||||||| | |||||||| |||||||||||||||  |||||||||||||| || ||| |||| ||||||||    
T  47031248 tgtattgaattgggattttgaaggattttaaaaaactttttggttatagaaaaatcttgagatattcaatcaagattttaaaaaattataaataatt 47031344  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 24939735 - 24939640
Alignment:
Q  58 gaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 153  Q
    |||| ||||||| ||||||| || ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||||||    
T  24939735 gagggtgtattgcattgggagttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattagaa 24939640  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 36355543 - 36355468
Alignment:
Q  84 aggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 159  Q
    ||||||||||| ||||||||||| ||| ||||||| ||| ||||||||||||||| || |||||||||||||||||    
T  36355543 aggattttaaatgattttttggttataaaaaaatcgtgaggtattcaatcaagattttaaaagattagaaataatt 36355468  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 32630714 - 32630798
Alignment:
Q  76 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 160  Q
    ||||| ||||||||||||| || |||||| | ||| ||||||||||| ||||||||||||| | || ||||||||||||||||||    
T  32630714 gattttgaaggattttaaatgactttttgcttataaaaaaatcttgaggtattcaatcaagcttttaaaagattagaaataattt 32630798  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 48545899 - 48545802
Alignment:
Q  64 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaa-tcttgaagtattcaatcaagatctttaaagattagaaataattt 160  Q
    |||||| |||| ||||| ||| |||||||||||||||||| ||  || ||||| |||||| ||||||||||||||| || || |||||||||||||||    
T  48545899 gtattgaattgagattttgaaagattttaaaagattttttagttctaaaaaaaatcttgaggtattcaatcaagattttaaaggattagaaataattt 48545802  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 32630649 - 32630716
Alignment:
Q  71 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagat 138  Q
    |||| ||||| ||||||||||||| ||  ||||||| ||| ||||||||||| |||||||||||||||    
T  32630649 attgagattttgaaggattttaaatgacgttttggttataaaaaaatcttgaggtattcaatcaagat 32630716  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 151861 - 151942
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  151861 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatcaagatttttaa 151942  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 27418723 - 27418642
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||| ||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  27418723 tgtactggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 27418642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 30110807 - 30110887
Alignment:
Q  64 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    ||||||||||| |||||  ||| ||||||||||| ||||| ||  || |||| ||||| |||||||||| ||||| |||||    
T  30110807 gtattggattgagatttcaaagaattttaaaagacttttttgttttataaaagtcttgtagtattcaattaagatttttaa 30110887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 27090638 - 27090734
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 159  Q
    ||||||||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  27090638 tgtattggattgggatttccaaagattttaaaagattttttggttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaataatt 27090734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 2372963 - 2373069
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 153  Q
    |||||| | ||||||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||| || |||||||||||    
T  2372963 ttaggatggtgtattgaattgggatttcgaaggattttaaaagacttttttgttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaa 2373062  T
Q  154 ataattt 160  Q
    |||||||    
T  2373063 ataattt 2373069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 30046113 - 30046222
Alignment:
Q  51 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagatta 150  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| ||||    
T  30046113 gacttagggggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatatta 30046212  T
Q  151 gaaataattt 160  Q
    ||||||||||    
T  30046213 gaaataattt 30046222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 30137157 - 30137266
Alignment:
Q  51 gacttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagatta 150  Q
    |||||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| ||||||||||| ||||||||||| ||| || ||| ||||    
T  30137157 gacttagggggttgtattaaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgaggtattcaatcatgattttaaaatatta 30137256  T
Q  151 gaaataattt 160  Q
    ||||||||||    
T  30137257 gaaataattt 30137266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 24936228 - 24936122
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 153  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  24936228 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 24936129  T
Q  154 ataattt 160  Q
    |||||||    
T  24936128 ataattt 24936122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 25684912 - 25684806
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 153  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  25684912 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 25684813  T
Q  154 ataattt 160  Q
    |||||||    
T  25684812 ataattt 25684806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 2485716 - 2485652
Alignment:
Q  71 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 135  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||||||  |||||||||||    
T  2485716 attgggatttcgaagaattttaaaagattttttggttatagaaaaatcttgagatattcaatcaa 2485652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 18176559 - 18176476
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 137  Q
    |||||||| ||||||| |||  |||||| | |||||||||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  18176559 ttaggagggtgtattgaattaagatttgaagggattttaaaagattttttaataataaaaaaatcttgtggtattcaatcaaga 18176476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 29940941 - 29941029
Alignment:
Q  56 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||| |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29940941 aggagggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29941029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 38823016 - 38822919
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttt-tggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 159  Q
    ||||||| ||||  |||| |||||||| ||||||| |||| | || ||| |||||||| || | ||||||||||||| || |||||||||||||||||    
T  38823016 tgtattgaattgaaattttgaaggattgtaaaagacttttatagttataaaaaaatctcgaggcattcaatcaagattttaaaagattagaaataatt 38822919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 7857021 - 7857125
Alignment:
Q  56 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaat 155  Q
    |||||| |||||| ||||| ||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||    
T  7857021 aggagggtgtattagattgagatttagaaggattttaaaagactttttggttatagaaaaatcttgaggtattcaatcaagattttaaaagattagaaat 7857120  T
Q  156 aattt 160  Q
    |||||    
T  7857121 aattt 7857125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 9689394 - 9689337
Alignment:
Q  86 gattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatcttta 143  Q
    ||||||||||||||||||  | ||| ||||||||||| ||||||||||||||| ||||    
T  9689394 gattttaaaagattttttaattataaaaaaatcttgaggtattcaatcaagattttta 9689337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 6902732 - 6902692
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagatttttt 103  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  6902732 tgtattggattgagatttggaaggattttaaaagacttttt 6902692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 40410593 - 40410674
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  | ||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  40410593 tgtattggattgagatttcaatggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 40410674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 9191125 - 9191230
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 153  Q
    |||||||| |||||||||||| |||||||||  ||||||||||| |||||||| |||||||||||||||  |||||||||||||| || |||||||||||    
T  9191125 ttaggagggtgtattggattgagatttggaaaaattttaaaagactttttggttatagaaaaatcttgagttattcaatcaagattttaaaagattagaa 9191224  T
Q  154 ataatt 159  Q
    ||||||    
T  9191225 ataatt 9191230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 51826917 - 51826843
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaaga 137  Q
    ||||||| |||  |||||| | ||||||||||||| |||||  ||||| ||||||||||  ||||||||||||||    
T  51826917 tgtattgaattaagatttgaagggattttaaaagactttttaataataaaaaaatcttgtggtattcaatcaaga 51826843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 26882907 - 26882826
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||   |||||||||||||| |||||    
T  26882907 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgttattcaatcaagatttttaa 26882826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 27198265 - 27198346
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 135  Q
    |||||||| |||||||||||| || ||  | ||||||||||||| |||||| | ||| |||| |||||  ||||||||||||    
T  27198265 ttaggagggtgtattggattgagactttaagggattttaaaagactttttgtttataaaaaagtcttgtggtattcaatcaa 27198346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 45318463 - 45318544
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| ||||   ||||||||||||||| |||||    
T  45318463 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttctggtattcaatcaagatttttaa 45318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 52705389 - 52705477
Alignment:
Q  56 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||| ||||||  |||| |||||  || |||||||||||||||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  52705389 aggagggtgtattcaattgagatttcaaaagattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 52705477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 14724020 - 14723940
Alignment:
Q  76 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaata 156  Q
    |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  14724020 gatttggaaggattttaaaagacttttttgttatagaaaaatcttgaagtattcaatcaagattttaaaagattagaaata 14723940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 24296740 - 24296639
Alignment:
Q  56 aggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaat 155  Q
    |||||| ||||||| |||||||||| ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| || |||||||| ||||    
T  24296740 aggagggtgtattgaattgggatttcgaaagattttaaaagactttttggttatagaaaaatcttgaggtattcaatcatgattttaaaagattataaat 24296641  T
Q  156 aa 157  Q
    ||    
T  24296640 aa 24296639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 2112786 - 2112875
Alignment:
Q  55 taggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    ||||||| |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  2112786 taggagggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 2112875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 42274975 - 42275056
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||||||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  42274975 tgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 42275056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 38806952 - 38806866
Alignment:
Q  71 attgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataa 157  Q
    |||||||||| ||  ||||||| |||| ||||  || ||| ||||||||||| ||||||||||||||| || | |||||||||||||    
T  38806952 attgggattttgatagattttagaagacttttaagttataaaaaaatcttgaggtattcaatcaagattttaacagattagaaataa 38806866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 1606094 - 1606013
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  1606094 tgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 1606013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 29260357 - 29260276
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  29260357 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 29260276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 43605444 - 43605364
Alignment:
Q  64 gtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  43605444 gtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 43605364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 23185725 - 23185797
Alignment:
Q  88 ttttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataattt 160  Q
    |||||||||| |||||  | ||| |||||||| || ||||||||||||||| || | | ||||||||||||||    
T  23185725 ttttaaaagactttttacttataaaaaaatctcgaggtattcaatcaagattttaatatattagaaataattt 23185797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 35164798 - 35164904
Alignment:
Q  54 ttaggaggttgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaa 153  Q
    ||||| |||||||||  |||| ||||| ||||||||||||| || |||||||| ||| |||||||||||  |||||||||| ||| || |||||||||||    
T  35164798 ttagggggttgtattcaattgagattttgaaggattttaaatgactttttggttataaaaaaatcttgagttattcaatcatgattttaaaagattagaa 35164897  T
Q  154 ataattt 160  Q
    |||||||    
T  35164898 ataattt 35164904  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 5116977 - 5117060
Alignment:
Q  76 gatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaaagattagaaataatt 159  Q
    ||||||||| ||||||||||||  ||||  | ||| ||||||||| | ||||||||||||||| || | |||||||||||||||    
T  5116977 gatttggaaagattttaaaagaccttttaattataaaaaaatcttaaggtattcaatcaagattttaagagattagaaataatt 5117060  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 8584086 - 8584005
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| |||||  |  || |||| |||||  ||||||||||||||| |||||    
T  8584086 tgtattggattgagatttcaaaggattttaaaagacttttttattttataaaagtcttgtggtattcaatcaagatttttaa 8584005  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 28847183 - 28847111
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaa 135  Q
    |||||||||||| |||||  ||||||||||||||| |||||  ||||| |||| ||| |  ||||||||||||    
T  28847183 tgtattggattgagattttaaaggattttaaaagacttttttataataaaaaagtctagtggtattcaatcaa 28847111  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 81863 - 81782
Alignment:
Q  63 tgtattggattgggatttggaaggattttaaaagattttttggtaatagaaaaatcttgaagtattcaatcaagatctttaa 144  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||  || |||| |||||  ||||||||||||||| |||||    
T  81863 tgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatcaagatttttaa 81782  T

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