View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5465_high_5 (Length: 384)

Name: NF5465_high_5
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5465_high_5
NF5465_high_5
[»] chr8 (1 HSPs)
chr8 (9-384)||(33536829-33537199)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 384
Target Start/End: Complemental strand, 33537199 - 33536829
Alignment:
Q  9 ttatactgctcctggaccaaggaccctgaaaaattctaagaaaatttgctgagcaccaaccactcacagaatatggttatgatccactctatcaacttcc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||     
T  33537199 ttatactgctcctggaccaaggaccctgaaaaattctaagaaaatttgctgagcaccaaccactcacagaatatggctatgatccactcttccaacttct 33537100  T
Q  109 aatcataactttacagaaaatgcaaaacgaatcaatggataagaaccaacagctgctccaatttgaatgacaaaagctttacattcacaaaatctaacta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33537099 aatcataactttacagaaaatgcaaaacgaatcaatggataagaaccaacagcttctccaatttgaatgacaaaagctttacattcacaaaatctaacta 33537000  T
Q  209 gtcagataatttttgcaactactgcaatgcaattaggtatgcttccaattaggctcgtttaaacttttgagcagcaactaaagaatcacatgatcttcat 308  Q
    |||| |||||||||||||||||||||||     ||||  || ||| |||||| |||||||||||||||||||||||||||||||||| || |||||||||    
T  33536999 gtcaaataatttttgcaactactgcaat-----taggcgtggttcaaattagactcgtttaaacttttgagcagcaactaaagaatctcacgatcttcat 33536905  T
Q  309 cagaggnnnnnnnnntctacaactatagactcgtttaaacttttgagtttaatcaagttacgtaccatgtcgttat 384  Q
    ||||||         ||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  33536904 cagaggaaaaaaaaatctacaactatagactcgtctaaacttttgagtttaatcatgttaagtaccatgtcgttat 33536829  T

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