View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5465_high_6 (Length: 365)
Name: NF5465_high_6
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 46875287 - 46874957
Alignment:
| Q |
16 |
tcaacaaggttcaactgtcaagtgagaatcaaggaagggttaaaagagaggaccaaaaaggttggtggctcttagaggtcaatagttattaaactttaaa |
115 |
Q |
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| T |
46875287 |
tcaacaaggttcaactgtcaagtgagaatcaaggaagggttaaa-gagaggaccaaaaaggttggtggctcttagaggtcaatagttattaaactttaaa |
46875189 |
T |
|
| Q |
116 |
gcataactagtaaagctttagcatcacatacagaaataaagcaagagaatgaacattgaacatagctcatagtttaagtaagccgattaaatgaccggtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
46875188 |
gcataactagtaaagctttagcatcacatacagaaataaagcaagagaatgaacattgaacatagctcatagtttaagtaagtggattaaatgaccgatt |
46875089 |
T |
|
| Q |
216 |
gtaagcctctgtatgcaactctgtaaagaacgaagaggagtaacagctagagtactatccaagagacctgtctcatcttgacaggaacaatattaagcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46875088 |
gtaagcctctgtatgcaactctgtaaagaacgaagaggagtaacagctagagtactatccaagaaacctgtctcatcttgacaggaacaatattaagcaa |
46874989 |
T |
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| Q |
316 |
aactaacatcatagtttgccacataacagatg |
347 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
46874988 |
aactaacatcatagtttgccacataacagatg |
46874957 |
T |
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