View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5465_high_7 (Length: 331)
Name: NF5465_high_7
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 20899645 - 20899332
Alignment:
| Q |
1 |
cagaacaaagaaataaaaaatgaaacaagagctaacaattaccacctactacttttaacatatgcaagatcatgcaaacgataccataacagctaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20899645 |
cagaacaaagaaataaaaaatgaaacaagagctaacaattaccacctactacttttaacatatgcaagatcatgtaaacgataccataacagctaaacaa |
20899546 |
T |
|
| Q |
101 |
tccctgttattggcctaatatcaacaaaactttgggtcatgtcctttgattaaactgcataataataaataaataacattctgaagaaaaggacggttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20899545 |
tccctgttattggcctaatatcaacaaaactttgggtcatgtcctttgattaaactgcataataataaataaaaaacattctgaagaaaaggacggttcc |
20899446 |
T |
|
| Q |
201 |
tattgcaaatggccaaaatacaaatggacaaccatatcaaagctgactcagtccccacagcacagaccatgtcctatagaatataattgtggggtcacag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20899445 |
tattgcaaatggccaaaatacaaatggacaaccatatcaaagctgactcagtccccacagcacagaccatgtcctatggaatataattgtggggtcacag |
20899346 |
T |
|
| Q |
301 |
tttctgctgctgct |
314 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
20899345 |
ttgctgctgctgct |
20899332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University