View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5465_low_10 (Length: 306)
Name: NF5465_low_10
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 13739658 - 13739872
Alignment:
| Q |
21 |
aggttgccaaaacttttcgaacgctcgtgaacaaccttgcaagtcgtaacttttccatgtttattggtagcttgtgatgttttggatttggctacatgtc |
120 |
Q |
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| T |
13739658 |
aggttgccaaaacttttcgaacactcgtgaacaaccttgcaagtcgtaacttttccatgtttattggtagcttgtgaggttttggatttggctacatgtc |
13739757 |
T |
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| Q |
121 |
acacatgtgtatgacaatcattgtagggtctatcatttgggtgagtgagtggtggtcgatatcttatctttaattggtatagtctggtgacaataaatga |
220 |
Q |
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| T |
13739758 |
acacatgtgtatgacaatcattgtaggatctatcatttgggtgagtgagtggtggtcgatatcttatctttaattggtatagtccggtgacaataaatga |
13739857 |
T |
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| Q |
221 |
ttacaaaggaagagt |
235 |
Q |
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| T |
13739858 |
ttacaaaggaagagt |
13739872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 13745158 - 13745372
Alignment:
| Q |
21 |
aggttgccaaaacttttcgaacgctcgtgaacaaccttgcaagtcgtaacttttccatgtttattggtagcttgtgatgttttggatttggctacatgtc |
120 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13745158 |
aggttgccaaaacttttcgaacactcgtgaacaaccttgcaagtcgtaacttttccatgtttattggtagcttgtgaggttttggatttggctacatgtc |
13745257 |
T |
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| Q |
121 |
acacatgtgtatgacaatcattgtagggtctatcatttgggtgagtgagtggtggtcgatatcttatctttaattggtatagtctggtgacaataaatga |
220 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13745258 |
acacatgtgtatgacaatcattgtaggatctatcatttgggtgagtgagtggtggtcgatatcttatctttaattggtatagtccggtgacaataaatga |
13745357 |
T |
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| Q |
221 |
ttacaaaggaagagt |
235 |
Q |
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||||||||||||||| |
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| T |
13745358 |
ttacaaaggaagagt |
13745372 |
T |
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