View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5465_low_11 (Length: 287)
Name: NF5465_low_11
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 33828061 - 33828347
Alignment:
| Q |
1 |
tattatactttaccaatacaaatatagttagtactaatgacttcttcaacgtcttttagtcttctactaagcctatttctctttatttctctactccatt |
100 |
Q |
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| T |
33828061 |
tattacactttaccaatacaaatatagttagtactaatgacttcttcaacgtcttttagtgttctactaagcctatttctctttatttctctactccatt |
33828160 |
T |
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| Q |
101 |
tgagctctgcagcaagaaaactaacacaaaatgaccaacaattaaagttccaataccacaaaggtcctcttctcaccggaaaaatctccatcaatctcat |
200 |
Q |
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| T |
33828161 |
tgagctcagcagcaagaaaactaacacaaaatgaccaacaattaaagttccaataccacaaaggccctcttctcaccggaaaaatctccatcaatctcat |
33828260 |
T |
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| Q |
201 |
atggtatggtaaattcaatcctacccaacgtgccataagctctgatttcatcgcttccatctcatcgcccaccagcaaacaccaacc |
287 |
Q |
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| T |
33828261 |
atggtatggtaaattcaatcctacccaacgtgccataatctctgatttcatcgcttccatttcctctcccaccatcaaaccccaacc |
33828347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 33820867 - 33821119
Alignment:
| Q |
35 |
taatgacttcttcaacgtcttttagtcttctactaagcctatttctctttatttctctactccatttgagctctgcagcaagaaaactaacacaaaatga |
134 |
Q |
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| T |
33820867 |
taatgacttcttcaatgtcttcaagtgttctactaagcctattcctctttatttctttactccatttgagctcagcagcaagaaaactaacacaaaatga |
33820966 |
T |
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| Q |
135 |
ccaacaattaaagttccaataccacaaaggtcctcttctcaccggaaaaatctccatcaatctcatatggtatggtaaattcaatcctacccaacgtgcc |
234 |
Q |
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| T |
33820967 |
ccaacaattaaagttccaataccacaaaggccctcttctcaccggaaaaatctccatcaatctcgtatggtacggtaaattcaatccatcccaacgagcc |
33821066 |
T |
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| Q |
235 |
ataagctctgatttcatcgcttccatctcatcgcccaccagcaaacaccaacc |
287 |
Q |
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| T |
33821067 |
ataatctctgatttcatcacttcaatttcctcaccgaccatcaaaccccaacc |
33821119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 27002178 - 27002263
Alignment:
| Q |
133 |
gaccaacaattaaagttccaataccacaaaggtcctcttctcaccggaaaaatctccatcaatctcatatggtatggtaaattcaa |
218 |
Q |
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| T |
27002178 |
gaccaacaacttaaatttcaataccacaaaggccctcttctcaccggaaaaatctcaatcaacctcatttggtatggaaaattcaa |
27002263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 26721459 - 26721544
Alignment:
| Q |
133 |
gaccaacaattaaagttccaataccacaaaggtcctcttctcaccggaaaaatctccatcaatctcatatggtatggtaaattcaa |
218 |
Q |
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| T |
26721459 |
gaccaacaacttaaatttcaataccacaaaggccctcttctaaccggtaaaatttcagtaaacctcatttggtatggaaaattcaa |
26721544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 26991208 - 26991293
Alignment:
| Q |
133 |
gaccaacaattaaagttccaataccacaaaggtcctcttctcaccggaaaaatctccatcaatctcatatggtatggtaaattcaa |
218 |
Q |
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| T |
26991208 |
gaccaacaacttaaatttcaataccacaaaggccctcttctaaccggtaaaatttcagtaaacctcatttggtatggaaaattcaa |
26991293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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