View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5465_low_12 (Length: 253)

Name: NF5465_low_12
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5465_low_12
NF5465_low_12
[»] chr7 (2 HSPs)
chr7 (154-242)||(19764980-19765068)
chr7 (1-73)||(19765149-19765221)
[»] chr6 (2 HSPs)
chr6 (154-242)||(394430-394518)
chr6 (1-58)||(394611-394668)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 19765068 - 19764980
Alignment:
Q  154 cttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttttctagaacctatgattgtttatgaagaataatc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19765068 cttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttttctagaacctatgattgtttatgaagaataatc 19764980  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19765221 - 19765149
Alignment:
Q  1 caaagaaatcgtattcaagagaccaatttcagacacaatcaacaatacataatgtgattatgatccaatttag 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19765221 caaagaaatcgtattcaagagaccaatttcagacacaatcaacaatacataatgtgattatgatccaatttag 19765149  T

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Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 394518 - 394430
Alignment:
Q  154 cttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttttctagaacctatgattgtttatgaagaataatc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  394518 cttcattcacaaggcatcatcaacatagtataaaaatttgatttttacaacttttctctagaacccatgattgttcatgaagaataatc 394430  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 394668 - 394611
Alignment:
Q  1 caaagaaatcgtattcaagagaccaatttcagacacaatcaacaatacataatgtgat 58  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  394668 caaagaaatcatattcaagagaccaatttcagacacagtcaaaaatacataatgtgat 394611  T

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