View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5465_low_3 (Length: 424)
Name: NF5465_low_3
Description: NF5465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5465_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 54 - 409
Target Start/End: Original strand, 2065879 - 2066235
Alignment:
| Q |
54 |
tgatatttgagtgacaaaattgataaataagaataagag-atgatgttttagtcagaagtagggaaagaccgccgcactcaaagaatacttatagcnnnn |
152 |
Q |
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| T |
2065879 |
tgatatttgagtgacaaaattgataaataagaataagaggatgatgttttagtcagaagtaggaaaataccaccgcactcaaagaatacttataactttt |
2065978 |
T |
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| Q |
153 |
nnnattaaaagaaacttaattcattcatttcatttaaaataagagtaaagatataagataaaatttaaacaaaaatacgaaaatcatcatgacttggagt |
252 |
Q |
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| T |
2065979 |
tttattacaagaaacttaattcattcattttatttaaaataagagtaaagatataagatgaaatttaaacaaaaatacgaaaatcatcatgacttggagt |
2066078 |
T |
|
| Q |
253 |
tatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacatt |
352 |
Q |
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| T |
2066079 |
tatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggcatcagaggttgctaaatcagaagaaagtatgcgccgacaaacatt |
2066178 |
T |
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| Q |
353 |
aataattgatgaaaatctaagacactgagtgtatcaccatatatactgtgtaccaac |
409 |
Q |
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| T |
2066179 |
aataattgatgaaaatctaagacactgaatgtatgatcatatatactgtgtaccaac |
2066235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 28031629 - 28031540
Alignment:
| Q |
178 |
catttcatttaaaataagagtaaagatataagataaaatttaaacaaaaatacgaaaatcatcatgacttggagttatcctagctaaact |
267 |
Q |
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| T |
28031629 |
cattttatttaaaataaaagtagagatacaagatgaaatttgaatgaaaatacgaaaactagcatgacatggagttatcctagctaaact |
28031540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 363
Target Start/End: Complemental strand, 7515117 - 7514936
Alignment:
| Q |
178 |
catttcatttaaaataagagtaaagatataagataaaatttaaacaaaaatacgaaaatcatcatgacttggagttatcctagctaaactctgagtttct |
277 |
Q |
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| T |
7515117 |
catttcatttaaaataagagtagatatataaga---aattcaaataaatatacacaaaccagcatgacgtggagctagcctagctaaactatgagcaact |
7515021 |
T |
|
| Q |
278 |
tcattgattttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattgatg |
363 |
Q |
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| T |
7515020 |
tcagtgactt-gtctcctaataaacctcatataagaggttactaaatgagaagaaactatgtaccaactatcattaataattgatg |
7514936 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 2806804 - 2806850
Alignment:
| Q |
315 |
gttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
361 |
Q |
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| T |
2806804 |
gttgctaaatcagaagaaagtaagcgccgacaatcattaataattga |
2806850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 361
Target Start/End: Original strand, 16349475 - 16349657
Alignment:
| Q |
178 |
catttcatttaaaataagagtaaagatataagataaaatttaaacaaaaatacgaaaatcatcatgacttggagttatcctagctaaactctgagtttct |
277 |
Q |
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| T |
16349475 |
catttcatttaaaataagagtatagatacatgatgaaattcaaatgaacatacaaaaactagcatgatatgaagctactctatctaaactatgagcaact |
16349574 |
T |
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| Q |
278 |
tcattgattttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
361 |
Q |
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| T |
16349575 |
tcattgactt-gtctcctaacaaatctaacatcagaggttgtcaaattagaataaagtatgtgccgacaatcattaataattga |
16349657 |
T |
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