View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5466-Insertion-1 (Length: 810)
Name: NF5466-Insertion-1
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 706; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 8 - 775
Target Start/End: Original strand, 29304024 - 29304789
Alignment:
| Q |
8 |
catatgtcatatagatacatacccctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcatgacgaagcttccaatcaagatttgatgc |
107 |
Q |
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| T |
29304024 |
catatgtcatatagatacatacccctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcatgacgaagcttccaatcaagatttgatgc |
29304123 |
T |
|
| Q |
108 |
ataattcattgttattgtctcaattgccatgggaacaaacacaccttgatccccatcaaaacagagtgcattgcacaagaagaccccacgataataagca |
207 |
Q |
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| T |
29304124 |
ataattcattgttattgtctcaattgccatgggaacaaacacaccttgatccccatcaaaacagagtgcattgcacaagaagaccccacgataataagca |
29304223 |
T |
|
| Q |
208 |
tctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaatacacgacaacatgtttatggcaactaccaggactc |
307 |
Q |
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| T |
29304224 |
tctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaatacacgacaacatgtttatggcaactacaaggactc |
29304323 |
T |
|
| Q |
308 |
tcttcaattcctcacgagaaagactggtgatcacattcccatcatagaggtctttgataacattaaacgatacaatcttcaattcctcgctcacatcttc |
407 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29304324 |
tcttcaattcctcacgagaaagattggtgatcacattcccatcatagaggtctttgataacattaaaagatacaatcttcaattcctcgctcacatcttc |
29304423 |
T |
|
| Q |
408 |
tacctctgctactcgaatcatgcaccaaaacacttcaccatgtttccccatgaagatacttccatcatccaatttaactaattcccacaaacgattaatc |
507 |
Q |
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| T |
29304424 |
tacctccgctactcgaatcatgcaccaaaacacttcaccatgtttccccatgaagatacttccatcatccaatttaactaattcccacaaacgattaatc |
29304523 |
T |
|
| Q |
508 |
ctattcaccagaa-ctcttcttctccgtgttgatcgatgatattcaataaattccgcaagagagaattggatacttcatttttcagaaaatcatttgaca |
606 |
Q |
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| T |
29304524 |
ctattcaccagaacctcttcttctccgtgttgatcgatgatattcaataaattccgcaagagagaattggatacttcatttttcagaaaatcatttgaca |
29304623 |
T |
|
| Q |
607 |
taaatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatccatcgaagaaacatattccgaaatgctcaagactacgcgatacaagtt |
706 |
Q |
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| T |
29304624 |
ataatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatccatcgaagaaacatatttcgaaatgctcaagactacgcgatacaagtt |
29304723 |
T |
|
| Q |
707 |
cccttgattcagccagaactctctgtcttggaaaaacattcaccgggaaatttccatttacatcataag |
775 |
Q |
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| T |
29304724 |
cccttgattcagccagaactctctgtctt-gaaaaacattcaccgg--aaattccattaacatcataag |
29304789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 394 - 664
Target Start/End: Original strand, 29321596 - 29321867
Alignment:
| Q |
394 |
tcgctcacatcttctacctctgctactcgaatcatgcaccaaaacacttcaccatgtttccccatgaagatacttccatcatccaatttaactaattccc |
493 |
Q |
| |
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| T |
29321596 |
tcgctcacatcttctacctctgttactcgaatcatgcaccaaaacacttcaccaagtttccccttaaagatatttccatcatccagcttagctaaatccc |
29321695 |
T |
|
| Q |
494 |
acaaacgattaatcctattcaccagaa-ctcttcttctccgtgttgatcgatgatattcaataaattccgcaagagagaattggatacttcatttttcag |
592 |
Q |
| |
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| ||||| ||||||| |||| |||||| |||||||||||| ||||||| ||| |||||||| ||| || |||||||| || | |||| || || || | |
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| T |
29321696 |
ataaacgtttaatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctg |
29321795 |
T |
|
| Q |
593 |
aaaatcatttgacataaatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatccatcga |
664 |
Q |
| |
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|| ||| || |||| || ||||| |||| ||||| | | |||||| ||| |||||||||||||||||||| |
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| T |
29321796 |
aagatccttcgacaataacatcaacgaaagtgatgcagtgaatgccaatgctttcaattcctgatccatcga |
29321867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 29321214 - 29321471
Alignment:
| Q |
30 |
ccctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcatgacgaagcttccaatcaagatttgatgcataattcattgttattgtctca |
129 |
Q |
| |
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|||||||| ||| ||||||||||||||| ||||| || ||||||||| ||| | | ||||| || || ||| |||| | |||||| || ||||| |
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| T |
29321214 |
ccctttgatgttactctctgcaatccaactaatggcaagcattgctgcacaacggaaccaccaataaacatgagatacatattgcattgtcatcatctca |
29321313 |
T |
|
| Q |
130 |
attgccatgggaacaaacacaccttgatccccatcaaaacagagtgcattgcacaagaagaccccacgataataagcatctgccattccagcagtaagac |
229 |
Q |
| |
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|||||| |||||||||| ||| ||| || |||||| | ||| | ||| |||||||||||||| | || |||||||| ||| |||||||||| || |
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| T |
29321314 |
attgccgtgggaacaaaaacatcttcatgcccatctgtagtgagcgatttgaacaagaagaccccaaggtagaaagcatctaacatcccagcagtaatac |
29321413 |
T |
|
| Q |
230 |
gattctcatggtccacatcataccaaagaggatcatcaacaatacacgacaacatgtt |
287 |
Q |
| |
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||||| || || ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
29321414 |
aattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgtt |
29321471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 29332409 - 29332548
Alignment:
| Q |
34 |
ttgaagtttatctctgcaatccaaccaatggtaaatattgctgcatgacgaagcttccaatcaagatttgatgcataattcattgttattgtctcaattg |
133 |
Q |
| |
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|||| |||| |||||||||| || |||||| || || ||||||||||| | | |||||||| ||| |||||||| ||| ||||||| || |||||| |
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| T |
29332409 |
ttgaggtttttctctgcaattgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatcccaattg |
29332508 |
T |
|
| Q |
134 |
ccatgggaacaaacacaccttgatccccatcaaaacagag |
173 |
Q |
| |
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| T |
29332509 |
cagtgggaacaaacacatattcatccccatctaaagagag |
29332548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 29332616 - 29332653
Alignment:
| Q |
241 |
tccacatcataccaaagaggatcatcaacaatacacga |
278 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||| |
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| T |
29332616 |
tccacatcataccaaagaggatcatcaataacacacga |
29332653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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