View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5466-Insertion-4 (Length: 616)

Name: NF5466-Insertion-4
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5466-Insertion-4
NF5466-Insertion-4
[»] scaffold0147 (1 HSPs)
scaffold0147 (8-614)||(13765-14352)


Alignment Details
Target: scaffold0147 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 614
Target Start/End: Original strand, 13765 - 14352
Alignment:
Q  8 caattttgtcctaattcagattccaaaattaatagatgtggacatgatgataacttgtttgttactatcactaaaaacacaagcaaagtgtttcattctg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13765 caattttgtcctaattcagattccaaaattaatagatgtggacatgatgataacttgtttgttactatcactaaaaacacgagcaaagtgtttcattctg 13864  T
Q  108 tccctatcaaactccctctcagctcgtggctatatgataatataaataattaagggttctttgannnnnnnnnnnnnnnncaatgtttataattaaaagt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||    
T  13865 tccctatcaaactccctctcagctcgtggctatatgataatataaataattaagggttctttgatttttgtttttattttcaatgtttataattaaaagt 13964  T
Q  208 aaaaataagaaatgaatacaaagaatgaaaacaaagatcaaacaagggatcaagattatggtcactgtcatggtggtggttactcagatgaacatattta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13965 aaaaataagaaatgaatacaaagaatgaaaacaaagatcaaacaagggatcaagattctggtcactgtcatggtggtggttactcagatgaacatattta 14064  T
Q  308 aagaaaagtttacaagtttgatgattttgatatttagagttctagattttgacaatgtgctgtcaaaaggcattgattaacagactaatttctagattac 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||    
T  14065 aagaaaagtttacaagtttgatgattttgatatttagagttctagattttgacaatgtgctgtcaaaaggcattgat------------------attac 14146  T
Q  408 aacaatttgcacttcgtctgcttcactcgttacgctttcagatccactcgctctgctgcgctacattcgagcgtctgtttacttatcaacgaatatatgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14147 aacaatttgcacttcgtctgcttcactcgttacgctttcagatccactcgctctgctgcgctacattcgagcgtctgtttacttatcaacgaatatatgt 14246  T
Q  508 cacttattaacatagttgccaactgttaatttgtaggtgtaactttttggtactacaaaatcaattttaaacgatctcaaccgtttaatttgtgtgacgc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14247 cacttattaacatagttgccaactgttaatttgtaggtgtaactttttggtactacaaaatcaattttaaacgatctcaaccg-ttaatttgtgtgacgc 14345  T

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