View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5466-Insertion-5 (Length: 512)

Name: NF5466-Insertion-5
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5466-Insertion-5
NF5466-Insertion-5
[»] chr2 (1 HSPs)
chr2 (8-512)||(11659538-11660049)


Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 512
Target Start/End: Original strand, 11659538 - 11660049
Alignment:
Q  8 aggatatcactaatcacatgcacgagtcacgtcacacataattatagttaattaagtcatagataatttaaatccaaaaggatcagctgcctcaaacacg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11659538 aggatatcactaatcacatgcacgagtcacgtcacacataattacagttaattaagtcatagataatttaaatccaaaaggatcagctgcctcaaacacg 11659637  T
Q  108 tgaaattgtcccaaaatatttagacatgtccaagcatacactgatgataaagtattagacaaaacatattaataataaatcctttgatgtcactatgaga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11659638 tgaaattgtcccaaaatatttagacatgtccaagcatacactgatgacaaagtactagacaaaacatattaataataaatcctttgatgtcactatgaga 11659737  T
Q  208 gtgagggtaattaaatcccaagaataaatattattagcaataaat----cagaggataaaacacaagactagttgcttgtttc--cnnnnnnnnnnnagt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||| | |||||||||              |||    
T  11659738 gtgagggtaattaaatcccaagaataaatattattagcaataaattcagaagaggataaaacacaagactaatcgcttgtttcttttttttttttttagt 11659837  T
Q  302 tatcattagtagtgttaatttcaattgtaattttatcttaatttgatttacatttagttagctaagttgttttgatgagctggcaaagatagctgctata 401  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11659838 tatcattagtagagttaatttcaattgtaatttcatcttaatttgctttacatttagttagctaagttgttttgatgagctggcaaagatagctgctata 11659937  T
Q  402 aaagctttcac-nnnnnnnnnnnnnnngaataagccctttaattgtgtaatcctaactaacttttttcataatgaatttttctcctcttttgtatcttct 500  Q
     ||||||||||                ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  11659938 taagctttcacttttttttttttttttgaataagccctttaattgtgtaatcctaactaatttttttcataatgaatttttctcctcttttgcatcttct 11660037  T
Q  501 tcatggttaagc 512  Q
    ||||||||||||    
T  11660038 tcatggttaagc 11660049  T

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