View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5466-Insertion-6 (Length: 238)
Name: NF5466-Insertion-6
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466-Insertion-6 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 28783254 - 28783479
Alignment:
| Q |
15 |
gtggacatggtttcttgaccggaaccggtggtggttgtggctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783254 |
gtggacatggtttcttgaccggaaccggtggtggttgtggctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctt |
28783353 |
T |
|
| Q |
115 |
tggtggtggacatggtttcttgactggaacaggaggaggaagaggtttatgatatacaggcgtaggtggagagagaggtttatgataaacaggc-caggt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28783354 |
tggtggtggacatggtttcttgactggaacaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggt |
28783453 |
T |
|
| Q |
214 |
ggagg-agaggtttctcatacacagg |
238 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
28783454 |
ggaggaagaggtttctcatacacagg |
28783479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 28783149 - 28783278
Alignment:
| Q |
15 |
gtggacatggtttcttgaccggaaccggtggtggttgtggctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctt |
114 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||| ||| ||||||||| || |||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
28783149 |
gtggacatggtttcttgatcgggactggtggtggaagtgcctttggaaccggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctt |
28783248 |
T |
|
| Q |
115 |
tggtggtggacatggtttcttgactggaac |
144 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
28783249 |
tggtggtggacatggtttcttgaccggaac |
28783278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 28783448 - 28783545
Alignment:
| Q |
143 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagagagaggtttatgataaacaggc-caggtggagg-agaggtttctcatacacagg |
238 |
Q |
| |
|
||||| |||||||||||||| | ||| ||||| |||||||||| |||||||||||| ||||||||| |||| ||||| ||||||||||| || ||||| |
|
|
| T |
28783448 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtttctcgtagacagg |
28783545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University