View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5466_high_17 (Length: 248)
Name: NF5466_high_17
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466_high_17 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 13412 - 13174
Alignment:
| Q |
1 |
acttcgtgtgtttttcgaaacaaagtccacaaaaaagcgcttatgaaggtagcgtacgatcacaactgaggaaaaaggaggatctgaattcacaaaacac |
100 |
Q |
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| T |
13412 |
acttcgtgtgtttttcgaaacgaagtccacaaaaaagcgcttatgaaggtagcgtacaatcacaactgaggaaaaaggaggatctgaattcacaaaacac |
13313 |
T |
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| Q |
101 |
gaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcac |
200 |
Q |
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| T |
13312 |
gaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcac |
13213 |
T |
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| Q |
201 |
tactattctcgccttaaaagtccagtttatctcgatatt |
239 |
Q |
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| T |
13212 |
tactattctcgccttaaaagtccagtttatctcgatatt |
13174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 7743 - 7590
Alignment:
| Q |
86 |
gaattcacaaaacacgaataagggagcacatgtgttagcacagaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacata |
185 |
Q |
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| T |
7743 |
gaattcacaaaacatgaataagggagcacatgtgttagcacagaagatgaaggaattagatatgatggattcaggtgatcttgaacacgtactagacatc |
7644 |
T |
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| Q |
186 |
gaagaagcacttcactactattctcgccttaaaagtccagtttatctcgatatt |
239 |
Q |
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| T |
7643 |
gaagaagcacttcactactattctcgccttaaaagtccggtttatctagatatt |
7590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 43879078 - 43879161
Alignment:
| Q |
128 |
gaagatgaagaaaatggatatgatggaatcaggtgatcttgaacatgtgctagacatagaagaagcacttcactactattctcg |
211 |
Q |
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| T |
43879078 |
gaagatgaaggaattggagatgaatgattcaggtgatgttgaacaagtactagatatagaagaagcacttcactattattctcg |
43879161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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