View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5466_high_18 (Length: 239)
Name: NF5466_high_18
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29303808 - 29304028
Alignment:
| Q |
1 |
caaatccttgatcgcgatttaccctagcttgcatgataacaaaaatgaagggaaaaagaaaa-gcacagtgcctgtctagaaacacatacatgcttctcg |
99 |
Q |
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| T |
29303808 |
caaatccttgatcgcgatttaccctagctcgcatgataacaaaaatgaagggaaaaaaaaaaagcacagtgcctgtctagaaacacatacatgcttctcg |
29303907 |
T |
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| Q |
100 |
aaacaatgtactacatagtacacagaaaaattacatgacatgacatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaacaattgagagt |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29303908 |
aaacaatgtactacatagtacaca--aaaattacatgacatgacatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaacaattgagagt |
29304005 |
T |
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| Q |
200 |
tcaaagctcattcaatatcatat |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
29304006 |
tcaaagctcattcaatatcatat |
29304028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 29321070 - 29321189
Alignment:
| Q |
91 |
tgcttctcgaaacaatgtactacatagtacacagaaaaattacatgacatgacatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaaca |
190 |
Q |
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||||||| ||||||||| ||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||| | |||||| |
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| T |
29321070 |
tgcttctgaaaacaatgttctacagagtacacagaaaaattacttgacatggcatga-----------tttctataaggtaatgcatcatcaagaaaaca |
29321158 |
T |
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| Q |
191 |
attgagagttcaaagctcattcaatatcatat |
222 |
Q |
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||||| || |||||| |||||||||||||| |
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| T |
29321159 |
cttgag-cttaaaagcttattcaatatcatat |
29321189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 29332306 - 29332387
Alignment:
| Q |
142 |
acatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaacaattga-gagttcaaagctcattcaatatcatat |
222 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||| | |||||| || | | || |||||||||| |||||||||| |
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| T |
29332306 |
acatgacatgattgctctttctacaaggtaatgcatgatcaagaaaacactttatggatttaaagctcattgaatatcatat |
29332387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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