View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5466_low_11 (Length: 286)

Name: NF5466_low_11
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5466_low_11
NF5466_low_11
[»] chr5 (5 HSPs)
chr5 (11-270)||(41900348-41900607)
chr5 (15-270)||(32268482-32268737)
chr5 (69-257)||(41886474-41886662)
chr5 (70-115)||(28532815-28532860)
chr5 (68-104)||(29021797-29021833)
[»] chr4 (9 HSPs)
chr4 (155-265)||(645194-645304)
chr4 (70-179)||(553761-553870)
chr4 (70-114)||(3437630-3437674)
chr4 (156-210)||(1545952-1546006)
chr4 (182-256)||(21833142-21833216)
chr4 (65-122)||(2391266-2391323)
chr4 (70-115)||(7308553-7308598)
chr4 (70-102)||(1755555-1755587)
chr4 (70-122)||(2381638-2381690)
[»] chr7 (2 HSPs)
chr7 (70-122)||(10615715-10615767)
chr7 (149-199)||(15091524-15091574)
[»] chr6 (7 HSPs)
chr6 (155-210)||(11935952-11936007)
chr6 (155-210)||(11947932-11947987)
chr6 (70-122)||(6417094-6417146)
chr6 (69-122)||(6423906-6423959)
chr6 (68-186)||(6395537-6395652)
chr6 (72-122)||(19633104-19633154)
chr6 (70-103)||(8913441-8913474)
[»] chr3 (4 HSPs)
chr3 (155-210)||(1657614-1657669)
chr3 (70-265)||(51113056-51113251)
chr3 (70-122)||(51763392-51763444)
chr3 (70-122)||(13469651-13469703)
[»] chr8 (5 HSPs)
chr8 (155-210)||(28245972-28246027)
chr8 (70-179)||(17642880-17642989)
chr8 (70-113)||(32151970-32152013)
chr8 (147-200)||(34935911-34935964)
chr8 (70-122)||(17635658-17635710)
[»] chr1 (4 HSPs)
chr1 (70-264)||(9587263-9587456)
chr1 (9-134)||(7555139-7555264)
chr1 (70-102)||(19467453-19467485)
chr1 (149-189)||(33161279-33161319)
[»] scaffold1155 (1 HSPs)
scaffold1155 (85-189)||(1821-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (85-189)||(8291-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (85-189)||(30584-30688)
[»] chr2 (1 HSPs)
chr2 (68-192)||(45244780-45244904)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 41900607 - 41900348
Alignment:
Q  11 caaagggaaacagtcagagataagtaaaagatcgctgctgttgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41900607 caaagggaaacagtcagagataagtaaaagatcgctgctattgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaa 41900508  T
Q  111 gctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  41900507 gctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttcaatggaaaatgagagatttgacaaagaagtttgttgaggt 41900408  T
Q  211 taccgtagaagcgcgagagattgagggaggtgagattggtaaatctatgaaagagagtag 270  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41900407 taccatagaagcgcgagagattgagggaggtgagattggtaaatctatgaaagagagtag 41900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 32268482 - 32268737
Alignment:
Q  15 gggaaacagtcagagataagtaaaagatcgctgctgttgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctc 114  Q
    |||||||| | ||||||||||| |||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||||||| || |||||||       
T  32268482 gggaaacaatgagagataagtacaagatcgctgctattgatatattgcattttggaacaagtgagagaggtcaaagttgtaatcttcttcgaaaaagtct 32268581  T
Q  115 gaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggttacc 214  Q
    | ||||||| || ||| |||| || || || |||||| |||||||| ||||||||||||||||||  |||||||||||| ||||| |||||||| |||||    
T  32268582 gcaacccaattgtgggaatgatgcatttgtttgagagattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagcttgttgagtttacc 32268681  T
Q  215 gtagaagcgcgagagattgagggaggtgagattggtaaatctatgaaagagagtag 270  Q
    || ||| | |||||| | |||||||||||| ||||| |||||| | ||||||||||    
T  32268682 gttgaaacacgagaggtcgagggaggtgaggttggtgaatctacgcaagagagtag 32268737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 69 - 257
Target Start/End: Complemental strand, 41886662 - 41886474
Alignment:
Q  69 taacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtt 168  Q
    |||||| |||||||||| ||||||||||||||||||| |||| |||| ||||||  || ||| || |  | ||| |  || || ||||||||||||||||    
T  41886662 taacaaatgagagaggttaaagttgtaatctttttggcaaaaactcgcaacccatttgtgggaataatacgttgatacgaaagattgagtgatgtgagtt 41886563  T
Q  169 tcaatggaaaattagagatttgacatagaagtttgttgaggttaccgtagaagcgcgagagattgagggaggtgagattggtaaatcta 257  Q
    |||||||||||||||||||||| |  ||||||||| |||||||||||  |||||  || || | ||| |||||||||||| | ||||||    
T  41886562 tcaatggaaaattagagatttggccgagaagtttgctgaggttaccgcggaagctagaaaggtcgagagaggtgagattgatgaatcta 41886474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 28532815 - 28532860
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 115  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  28532815 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 28532860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 29021797 - 29021833
Alignment:
Q  68 gtaacaagtgagagaggtcaaagttgtaatctttttg 104  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  29021797 gtaacaagtgagagaggtcaaagtagtaatgtttttg 29021833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 645194 - 645304
Alignment:
Q  155 gagtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggttaccgtagaagcgcgagagattgagggaggtgagattggtaaat 254  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||| |||||||||| |||  || ||| |||||| |  |||||| | || ||||||||     
T  645194 gagtgatgtgagtctcaatggaaaactagagatttggcatagaagcttgttgaggtaacccgagtagcacgagaggtcaagggagttaaggttggtaaac 645293  T
Q  255 ctatgaaagag 265  Q
    || ||||||||    
T  645294 ctttgaaagag 645304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 553761 - 553870
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 169  Q
    |||| ||||||||||||||||||||||| |||| ||| |||||||| ||||||  |||||| |||  |  ||  |  ||||| | |||||||||||| ||    
T  553761 aacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggtt 553860  T
Q  170 caatggaaaa 179  Q
    ||||||||||    
T  553861 caatggaaaa 553870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 3437674 - 3437630
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctc 114  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||    
T  3437674 aacaactgagagaggtcaaagttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 1545952 - 1546006
Alignment:
Q  156 agtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggt 210  Q
    |||| ||||||||||||||||||| ||||||||||  | ||||| ||||||||||    
T  1545952 agtgttgtgagtttcaatggaaaagtagagatttggtagagaagcttgttgaggt 1546006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 21833216 - 21833142
Alignment:
Q  182 agagatttgacatagaagtttgttgaggttaccgtagaagcgcgagagattgagggaggtgagattggtaaatct 256  Q
    |||||||||||  ||||| |||||||||| ||||| |||||| ||||| || |||||||| || ||||| |||||    
T  21833216 agagatttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatct 21833142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 2391323 - 2391266
Alignment:
Q  65 ttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    |||| ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  2391323 ttcggaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 2391266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 7308553 - 7308598
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 115  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||||    
T  7308553 aacaagtgagacaggtcaaagttgtaatcttctgggacaaagctcg 7308598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 1755555 - 1755587
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttt 102  Q
    |||| ||||||||||||||||||||||||||||    
T  1755555 aacatgtgagagaggtcaaagttgtaatctttt 1755587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 2381690 - 2381638
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    ||||||| |||||||||||| || | ||||||||||| |||||||| ||||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaaccca 2381638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 10615715 - 10615767
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||    
T  10615715 aacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaaccca 10615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 15091574 - 15091524
Alignment:
Q  149 gagtttgagtgatgtgagtttcaatggaaaattagagatttgacatagaag 199  Q
    ||||||||||||| ||||||||||||| ||| | ||||||||||| |||||    
T  15091574 gagtttgagtgatttgagtttcaatgggaaaattgagatttgacagagaag 15091524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 11936007 - 11935952
Alignment:
Q  155 gagtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggt 210  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||    
T  11936007 gagtgatgtgagtctcaatggaaaactagagatttggcatagaagcttgttgaggt 11935952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 11947987 - 11947932
Alignment:
Q  155 gagtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggt 210  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||    
T  11947987 gagtgatgtgagtctcaatggaaaactagagatttggcatagaagcttgttgaggt 11947932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 6417094 - 6417146
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||| ||||||    
T  6417094 aacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaaccca 6417146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 6423906 - 6423959
Alignment:
Q  69 taacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    |||||||||||||||||||||||||| || |||| ||| |||||||| ||||||    
T  6423906 taacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaaccca 6423959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 6395537 - 6395652
Alignment:
Q  68 gtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagt 167  Q
    ||||||| |||||||||||||||||||||| |||| ||| | |||| | ||||||  || ||| | |  || || |||   |||||||||||||||||||    
T  6395537 gtaacaactgagagaggtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaagtagcattcgtc---gagtttgagtgatgtgagt 6395633  T
Q  168 ttcaatggaaaattagaga 186  Q
    |||||||| ||||| ||||    
T  6395634 ttcaatgggaaatttgaga 6395652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 19633104 - 19633154
Alignment:
Q  72 caagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    ||||||||||||||||||||||||||  ||| ||| |||||||| ||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaaccca 19633154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 8913474 - 8913441
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatcttttt 103  Q
    ||||| ||||||||||||||||||||||||||||    
T  8913474 aacaattgagagaggtcaaagttgtaatcttttt 8913441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 1657614 - 1657669
Alignment:
Q  155 gagtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggt 210  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||    
T  1657614 gagtgatgtgagtctcaatggaaaactagagatttggcatagaagcttgttgaggt 1657669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 51113251 - 51113056
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 169  Q
    |||||||||||||||||| ||||||||| ||||  || |||||||| || |||  || ||| || | ||||| ||  ||||  |||||||| || |||||    
T  51113251 aacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttgtgggaataatgcttttgttggagatattgagtgaagtaagttt 51113152  T
Q  170 caatggaaaattagagatttgacatagaagtttgttgaggttaccgtagaagcgcgagagattgagggaggtgagattggtaaatctatgaaagag 265  Q
    |||||| |||  |||||||| | |||| || |||||||||| |  | || |||  |  || |||||||||||||| ||||| |||||| |||||||    
T  51113151 caatgggaaacgagagatttcaaatagcaggttgttgaggtcaaaggagtagcatgtaaggttgagggaggtgaggttggtgaatctaagaaagag 51113056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 51763444 - 51763392
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    ||||||||||||| |||||||||||||||||||  |||||| |||| ||||||    
T  51763444 aacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaaccca 51763392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 13469703 - 13469651
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    ||||||||||||||||||  |||||| |||||| ||| |||||||| ||||||    
T  13469703 aacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaaccca 13469651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 28246027 - 28245972
Alignment:
Q  155 gagtgatgtgagtttcaatggaaaattagagatttgacatagaagtttgttgaggt 210  Q
    ||||||||||| | ||||||||||| |||||||||| |||||||| ||||||||||    
T  28246027 gagtgatgtgaatctcaatggaaaactagagatttggcatagaagcttgttgaggt 28245972  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 17642989 - 17642880
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 169  Q
    |||||||||||||||||||||||||||| || | ||| |||||| | ||||||   | ||| |||  |   ||||  ||||| |||||||||||||||||    
T  17642989 aacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagttt 17642890  T
Q  170 caatggaaaa 179  Q
    ||||||||||    
T  17642889 caatggaaaa 17642880  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 32151970 - 32152013
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagct 113  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||    
T  32151970 aacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 34935964 - 34935911
Alignment:
Q  147 gagagtttgagtgatgtgagtttcaatggaaaattagagatttgacatagaagt 200  Q
    ||||| ||||||||||| || |||||||| ||| |||| |||||||||||||||    
T  34935964 gagagattgagtgatgtaaggttcaatgggaaactagaaatttgacatagaagt 34935911  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 17635710 - 17635658
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaaccca 122  Q
    |||||||||||||||||||||||||||| ||   ||| |||||||| ||||||    
T  17635710 aacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaaccca 17635658  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 264
Target Start/End: Original strand, 9587263 - 9587456
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 169  Q
    ||||| ||||||| ||||| ||||||||||||  ||| |||||  | ||||||| |||||| |||  |  |||    ||||| ||||| |||||||||||    
T  9587263 aacaaatgagagatgtcaacgttgtaatctttaaggagaaagcatgcaacccaattgcgggaatgcaggattgactggagagattgagcgatgtgagttt 9587362  T
Q  170 caatggaaaattagagatttgacatagaagtttgttgaggttaccgtagaagcgcgagagattgagggaggtgagattggtaaatctatgaaaga 264  Q
    |||||| |||  ||||| |||| ||||||| | |||||||| ||| | | ||| || ||| | |||||||||||| ||||| ||||| |||||||    
T  9587363 caatgggaaacaagagacttgagatagaagctcgttgaggtcacctttgtagc-cgtgaggtcgagggaggtgaggttggtgaatctttgaaaga 9587456  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 7555139 - 7555264
Alignment:
Q  9 agcaaagggaaacagtcagagataagtaaaagatcgctgctgttgatataatgcatttcgtaacaagtgagagaggtcaaagttgtaatctttttggaaa 108  Q
    |||||||||||||| ||||  || ||||| |  ||  |||| |||||| ||| ||||| | |||||||||| ||||| ||||||||||| |||| ||| |    
T  7555139 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 7555238  T
Q  109 aagctcgaaacccaaatgcggggatg 134  Q
    ||||||| || |||| ||| ||||||    
T  7555239 aagctcgcaatccaattgcagggatg 7555264  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 19467485 - 19467453
Alignment:
Q  70 aacaagtgagagaggtcaaagttgtaatctttt 102  Q
    |||||||||||||||||||||||||||| ||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatatttt 19467453  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 33161279 - 33161319
Alignment:
Q  149 gagtttgagtgatgtgagtttcaatggaaaattagagattt 189  Q
    |||||||||||||| |||||||||||| |||||| ||||||    
T  33161279 gagtttgagtgatgagagtttcaatgggaaattatagattt 33161319  T

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Target: scaffold1155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 1925 - 1821
Alignment:
Q  85 tcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttcaatggaaaattaga 184  Q
    ||||||||||||| |||| ||| ||| |||| ||||||  |||||| || | |  |||||  ||||| |||||||||||||| |||||||| |||  |||    
T  1925 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 1826  T
Q  185 gattt 189  Q
    |||||    
T  1825 gattt 1821  T

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Target: scaffold0345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 8291 - 8395
Alignment:
Q  85 tcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttcaatggaaaattaga 184  Q
    ||||||||||||| |||| ||| ||| |||| ||||||  |||||| || | |  |||||  ||||| |||||||||||||| |||||||| |||  |||    
T  8291 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 8390  T
Q  185 gattt 189  Q
    |||||    
T  8391 gattt 8395  T

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Target: scaffold0105 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 30688 - 30584
Alignment:
Q  85 tcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttcaatggaaaattaga 184  Q
    ||||||||||||| |||| ||| ||| |||| ||||||  |||||| || | |  |||||  ||||| |||||||||||||| |||||||| |||  |||    
T  30688 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 30589  T
Q  185 gattt 189  Q
    |||||    
T  30588 gattt 30584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 45244904 - 45244780
Alignment:
Q  68 gtaacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagt 167  Q
    ||||||| |||||||||||||| || ||||  ||| ||| |||||| | ||||||   ||||| |||  ||||||||| ||||| | |||||| | || |    
T  45244904 gtaacaaatgagagaggtcaaatttctaatagtttgggagaaagcttgcaacccattcgcgggaatggtgctttggtcggagagatagagtgacgagatt 45244805  T
Q  168 ttcaatggaaaattagagatttgac 192  Q
    |||||||| || | |||||||||||    
T  45244804 ttcaatggtaactgagagatttgac 45244780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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