View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5466_low_15 (Length: 251)

Name: NF5466_low_15
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5466_low_15
NF5466_low_15
[»] chr3 (2 HSPs)
chr3 (16-251)||(26073116-26073360)
chr3 (89-129)||(42974825-42974865)
[»] chr5 (3 HSPs)
chr5 (89-134)||(28735820-28735865)
chr5 (89-141)||(18542218-18542270)
chr5 (88-140)||(12976659-12976711)
[»] chr2 (2 HSPs)
chr2 (99-143)||(22556236-22556280)
chr2 (99-135)||(42654363-42654398)
[»] scaffold0001 (1 HSPs)
scaffold0001 (99-141)||(398637-398679)
[»] chr6 (6 HSPs)
chr6 (88-134)||(2468479-2468525)
chr6 (89-143)||(10666627-10666681)
chr6 (96-140)||(3846259-3846303)
chr6 (89-129)||(4005137-4005177)
chr6 (96-128)||(28298802-28298834)
chr6 (96-128)||(28513239-28513271)
[»] chr4 (3 HSPs)
chr4 (88-134)||(7422169-7422215)
chr4 (88-134)||(27131679-27131725)
chr4 (88-129)||(43397111-43397152)
[»] chr1 (1 HSPs)
chr1 (89-121)||(21158043-21158075)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 26073360 - 26073116
Alignment:
Q  16 aaacaaacataaaagtagagtaaaag---------acacatttctgatcaaagatatatctgtggtgcctgacacttgtcaaacacatgtaattacattc 106  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||    
T  26073360 aaacaaacataaaagtagagtaaaagtagcaactgacacatttctgatcaaagatgtatctgtggtgtctgacacttatcaaacatatgtaattacattc 26073261  T
Q  107 aattacttctactttcttaaattattacttgtgtctagtatattgtcatgtccaatgttcgtgtcagtgcttaattacggaaaacaaagtaagcaaagaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26073260 aattacttctactttcttaaattattacttgtgtctagtatattgtcatgtccaatgttcgtgtcactgcttaattacggaaaacaaagtaagcaaagaa 26073161  T
Q  207 agcattaccgtgattaggtggaacaacaaaactaagctcccacat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26073160 agcattaccgtgattaggtggaacaacaaaactaagctcccacat 26073116  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 42974865 - 42974825
Alignment:
Q  89 acacatgtaattacattcaattacttctactttcttaaatt 129  Q
    ||||||||| | ||||||||||||||||| |||||||||||    
T  42974865 acacatgtagtaacattcaattacttctattttcttaaatt 42974825  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 28735820 - 28735865
Alignment:
Q  89 acacatgtaattacattcaattacttctactttcttaaattattac 134  Q
    |||||| |||||||||||||| ||||||| ||||||||||||||||    
T  28735820 acacatataattacattcaatcacttctattttcttaaattattac 28735865  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 18542218 - 18542270
Alignment:
Q  89 acacatgtaattacattcaattacttctactttcttaaattattacttgtgtc 141  Q
    |||||||| ||||||||||||||||| || ||||| ||||||||||| |||||    
T  18542218 acacatgtgattacattcaattacttgtattttctcaaattattactggtgtc 18542270  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 12976659 - 12976711
Alignment:
Q  88 aacacatgtaattacattcaattacttctactttcttaaattattacttgtgt 140  Q
    ||||||||| |||||||||| | |||| || ||||||||||||||||| ||||    
T  12976659 aacacatgtgattacattcattgacttttattttcttaaattattactggtgt 12976711  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 22556280 - 22556236
Alignment:
Q  99 ttacattcaattacttctactttcttaaattattacttgtgtcta 143  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||    
T  22556280 ttacattcaatcacttctattttcttaaattattacctgtgtcta 22556236  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 42654363 - 42654398
Alignment:
Q  99 ttacattcaattacttctactttcttaaattattact 135  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42654363 ttacattcaattacttcta-tttcttaaattattact 42654398  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 398679 - 398637
Alignment:
Q  99 ttacattcaattacttctactttcttaaattattacttgtgtc 141  Q
    ||||||||||||||||| | ||||||||||||||| |||||||    
T  398679 ttacattcaattacttcaattttcttaaattattatttgtgtc 398637  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 2468479 - 2468525
Alignment:
Q  88 aacacatgtaattacattcaattacttctactttcttaaattattac 134  Q
    |||||||||  ||||||||||||||||| | ||||||||||||||||    
T  2468479 aacacatgtggttacattcaattacttccattttcttaaattattac 2468525  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 10666627 - 10666681
Alignment:
Q  89 acacatgtaattacattcaattacttctactttcttaaattattacttgtgtcta 143  Q
    ||||||| |||| |||||||||||||||| ||||| ||||||||| | |||||||    
T  10666627 acacatgaaatttcattcaattacttctattttctcaaattattattagtgtcta 10666681  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 3846303 - 3846259
Alignment:
Q  96 taattacattcaattacttctactttcttaaattattacttgtgt 140  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||    
T  3846303 taattacattcaattacttaaattttctcaaattattacttgtgt 3846259  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 4005177 - 4005137
Alignment:
Q  89 acacatgtaattacattcaattacttctactttcttaaatt 129  Q
    ||||||||||||||||||||| ||||||| ||| |||||||    
T  4005177 acacatgtaattacattcaatcacttctattttattaaatt 4005137  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 28298802 - 28298834
Alignment:
Q  96 taattacattcaattacttctactttcttaaat 128  Q
    |||||||||||||||| ||||||||||||||||    
T  28298802 taattacattcaattatttctactttcttaaat 28298834  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 28513271 - 28513239
Alignment:
Q  96 taattacattcaattacttctactttcttaaat 128  Q
    |||||||||||||||| ||||||||||||||||    
T  28513271 taattacattcaattatttctactttcttaaat 28513239  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 7422215 - 7422169
Alignment:
Q  88 aacacatgtaattacattcaattacttctactttcttaaattattac 134  Q
    ||||||| |||||||||||||| ||||||| ||||| ||||||||||    
T  7422215 aacacatataattacattcaatcacttctattttctcaaattattac 7422169  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 27131679 - 27131725
Alignment:
Q  88 aacacatgtaattacattcaattacttctactttcttaaattattac 134  Q
    |||||||||  ||||||||||||||||| | ||||||||||||||||    
T  27131679 aacacatgtggttacattcaattacttccattttcttaaattattac 27131725  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 43397152 - 43397111
Alignment:
Q  88 aacacatgtaattacattcaattacttctactttcttaaatt 129  Q
    ||||||||| |||||||||||||||| ||| |||||||||||    
T  43397152 aacacatgtgattacattcaattactgctattttcttaaatt 43397111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 21158075 - 21158043
Alignment:
Q  89 acacatgtaattacattcaattacttctacttt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  21158075 acacatgtagttacattcaattacttctacttt 21158043  T

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