View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5466_low_17 (Length: 249)
Name: NF5466_low_17
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 34392679 - 34392440
Alignment:
| Q |
18 |
ataaccaaataactaatatatatccttgtaactaaatttaatttttcaaaacacccacatccacacgaaagttgaaaacaaagaaatattagtcctatta |
117 |
Q |
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| T |
34392679 |
ataaccaaataactaatatatatccttgtaactaaatttaatttttcaaaacacccacatccacacgaaaggtgaaaacaaagacatattagtcctatta |
34392580 |
T |
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| Q |
118 |
ttatg-------nnnnnnnnnnngaagaggtccttttattatgtttaaaacgtgtctttggatgtaactagataaaacttgggcgtaattagaa-aaatt |
209 |
Q |
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| T |
34392579 |
ttatgttttattttttatttttttaagaggtccttttattatgtttaaaacgtgtctttggatgtaactagataaaacttgggtgtaattagaatttttt |
34392480 |
T |
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| Q |
210 |
ctttcttaaaatagtaatcaactaataatatatatttttt |
249 |
Q |
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| T |
34392479 |
ttttcttaaaatagtaatcaactaataatatatatatttt |
34392440 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 44437940 - 44438004
Alignment:
| Q |
144 |
ttttattatgtttaaaacgtgtctttggatgtaactagataaaacttgggcgtaattagaaaaat |
208 |
Q |
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| T |
44437940 |
ttttattatgcctaaaacgtgactctggatgttactagataaaactaaggcgtaagtagaaaaat |
44438004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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