View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5466_low_2 (Length: 458)
Name: NF5466_low_2
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 88 - 438
Target Start/End: Original strand, 31488746 - 31489088
Alignment:
| Q |
88 |
tcttttcatttttctggtcttttaaagaaaaagtagaaaaatcatgttaatgttaataatagaaaaacatagtattccgcctgtgtatggttctacaatc |
187 |
Q |
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| T |
31488746 |
tcttttcatttttctagtctt--aaagaaaaagtagaaaaatcatgttaat------aatagaaaaagatagtattccgcctgtgccttgttctacaatc |
31488837 |
T |
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| Q |
188 |
gtatccctcgcgtattcaagaagtatatgatatgtattatacaattgnnnnnnnattacaaataaaatttaataatcggatattctcatgatacatatca |
287 |
Q |
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| T |
31488838 |
gtatccctcacgtattcaagaagtatatgatatgtattatacaattgtttttttattacaaataaaatttaataatcggatactcttatgatatatatca |
31488937 |
T |
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| Q |
288 |
agcagatatcaatgtatcatacatatcaaatactagtatttcataaattttaaagtatcgtggcttcaaattaattactaaatttagccatcgaaactat |
387 |
Q |
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| T |
31488938 |
agcagatatcaatgtatcatacatatcaaatactagtatttcatcaattttaaagtatcgcaacttcaaattaatcactaaatttagccatcgaaactat |
31489037 |
T |
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| Q |
388 |
gaacggatgtcttgtttcgaaatttagctattataaattttatattgcata |
438 |
Q |
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| T |
31489038 |
gcacggatgtcttgttttgaaatttagttattgtaaattttatattgcata |
31489088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 31496989 - 31497117
Alignment:
| Q |
291 |
agatatcaatgtatcatacatatcaaatactagtatttcataaattttaaagtatcgtggcttcaaattaattactaaatttagccatcgaaactatgaa |
390 |
Q |
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| T |
31496989 |
agatatcaatgtatcatacatatcaaatactagtatttcatcaattttaaagtatcgcggcttaaaattaatcactaaatttagccatcgaaactatgca |
31497088 |
T |
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| Q |
391 |
cggatgtcttgtttcgaaatttagctatt |
419 |
Q |
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| T |
31497089 |
cggatgtcttgtttcgaaatttagttatt |
31497117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 31502375 - 31502503
Alignment:
| Q |
291 |
agatatcaatgtatcatacatatcaaatactagtatttcataaattttaaagtatcgtggcttcaaattaattactaaatttagccatcgaaactatgaa |
390 |
Q |
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| T |
31502375 |
agatatcaatgtatcatacatatcaaatactagtatttcatcaattttaaagtatcgcggcttaaaattaatcactaaatttagccatcgaaactatgca |
31502474 |
T |
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| Q |
391 |
cggatgtcttgtttcgaaatttagctatt |
419 |
Q |
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| T |
31502475 |
cggatgtcttgtttcgaaatttagttatt |
31502503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 31491611 - 31491728
Alignment:
| Q |
302 |
tatcatacatatcaaatactagtatttcataaattttaaagtatcgtggcttcaaattaattactaaatttagccatcgaaactatgaacggatgtcttg |
401 |
Q |
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| T |
31491611 |
tatcatacatatcaaatactagtatttcatcaattttaaagtatcgcggcttcaaattaatcactaaaattagccatcgaaactatgcacagatgtcttg |
31491710 |
T |
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| Q |
402 |
tttcgaaatttagctatt |
419 |
Q |
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| T |
31491711 |
tttcgaaatttagttatt |
31491728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 31488673 - 31488720
Alignment:
| Q |
11 |
acatcatcaccgccattaaactatatctcaaaaagaacatcattatataat |
61 |
Q |
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| T |
31488673 |
acatcatcaccg---ttaaactatatctcaaaaagaacatcattatataat |
31488720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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