View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5466_low_4 (Length: 417)
Name: NF5466_low_4
Description: NF5466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5466_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 400
Target Start/End: Complemental strand, 35044175 - 35043795
Alignment:
| Q |
5 |
gagaagcaaaggctctatcgtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
104 |
Q |
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| T |
35044175 |
gagaagcaaaggctctatcgtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
35044076 |
T |
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| Q |
105 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggct |
204 |
Q |
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| T |
35044075 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagctccaccggct |
35043976 |
T |
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| Q |
205 |
tctggtggtggtgtctttgaagctacactagtattaatgcggcggcttctcagtagccaaaagagaacgaaaagaaacaacaaagtggtgcaaatagtaa |
304 |
Q |
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| T |
35043975 |
tctgg---------------agctacactagtattaatgcggcggcttctcagtagccaaaagagaacgaaaagaaacaacaaagtggtgcaaatagtaa |
35043891 |
T |
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| Q |
305 |
atggttgaagggtcgaaggtgaaagcaaattattcatcatttgcttggtgttagaaatggagtactatagctagcggtgtagtgtaatgtgtgatg |
400 |
Q |
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| T |
35043890 |
atggttgaagggtcgagggtgaaagcaaattattcatcatttgcttggtgttagaaatggagtactatagctagcggtgtagtgtaatgtgtgatg |
35043795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 35029887 - 35029678
Alignment:
| Q |
25 |
tttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaag-ataggtccgtatttatcggct |
123 |
Q |
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| T |
35029887 |
tttacggtgaaacattgtttcaccatttcataactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatgggtccgtatttgtcggct |
35029788 |
T |
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| Q |
124 |
agcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttct------ggtggtggtg |
217 |
Q |
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| T |
35029787 |
aagtttcctaaggtaacgtgaggtggttgggacccacctaagaggtggaggtggccaattaacggccatgctccgctggcttctggcggcggtggtggtg |
35029688 |
T |
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| Q |
218 |
tctttgaagc |
227 |
Q |
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|||||||||| |
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| T |
35029687 |
tctttgaagc |
35029678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 35019798 - 35019594
Alignment:
| Q |
22 |
tcgtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcgg |
121 |
Q |
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||||||||||| || || |||||| |||||||| ||||||||| |||| |||||||||||||| ||||||| ||||||||| ||||||||||| |||| |
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| T |
35019798 |
tcgtttacggtaaaacactgtttcaccatttcataactgcttactactaaggttttgtgaacacctaaacgaacggtgaagatgggtccgtatttgtcgg |
35019699 |
T |
|
| Q |
122 |
ctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggcttctggtggtggtgtctt |
221 |
Q |
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||| || ||||||||||| |||||||| | ||| |||||||||||||||||||||||||| || ||||| | ||| | |||||| ||||||||||| |
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| T |
35019698 |
ctaagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggccgattaacggccatgatccgccggcttc---cggtggtgtctt |
35019602 |
T |
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| Q |
222 |
tgaagcta |
229 |
Q |
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|||||||| |
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| T |
35019601 |
tgaagcta |
35019594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 35036014 - 35035791
Alignment:
| Q |
5 |
gagaagcaaaggctctatcgtttacggtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagat |
104 |
Q |
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|||||||||||||| | |||||||| ||||| || ||| | || ||||| |||||||| | ||||| ||| |||||||| ||||| | |||||||| |
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| T |
35036014 |
gagaagcaaaggctttgtcgtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcactgtgaagat |
35035915 |
T |
|
| Q |
105 |
aggtccgtatttatcggctagcttccctaaggtgacatgaggtggctcggatccacctaagaggtggaggtggccgatcaaaggccaagctccactggct |
204 |
Q |
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| T |
35035914 |
ggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagcgccagcagct |
35035815 |
T |
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| Q |
205 |
tctggtggtggtgtctttgaagct |
228 |
Q |
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|| |||||||||||| |||||||| |
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| T |
35035814 |
tcgggtggtggtgtcattgaagct |
35035791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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